Summarise Patient-Level Drug Utilisation in Data Mapped to the OMOP Common Data Model

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Documentation for package ‘DrugUtilisation’ version 0.6.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

addDailyDose	add daily dose information to a drug_exposure table
addDrugUse	Add new columns with drug use related information
addIndication	Get indication for a target cohort
addRoute	add route column to a table containing drug_exposure information
benchmarkDUS	Run benchmark of drug utilisation cohort generation
dailyDoseCoverage	Check coverage of daily dose computation in a sample of the cdm for selected concept sets and ingredient
generateAtcCohortSet	Generates a cohort of the drug use of ATC name(s) of interest.
generateDrugUtilisationCohortSet	Generates a cohort of the drug use of a certain list of concepts.
generateIngredientCohortSet	Generates a cohort of the drug use of ingredient name(s) of interest.
indicationToStrata	Create new variables summarising the data of indication that can be used as stratification columns
mockDrugUtilisation	It creates a mock database for testing drugutilisation package
patternsWithFormula	Patterns valid to compute daily dose with the associated formula.
patternTable	Function to create a tibble with the patterns from current drug strength table
readConceptList	Get concept ids from a provided path to json files
stratifyByUnit	Function to stratify a conceptSet by unit
summariseDrugUse	This function is used to summarise the dose table over multiple cohorts.
summariseIndication	This function is used to summarise the indication table over multiple cohorts.
summariseTreatmentFromCohort	This function is used to summarise the dose table over multiple cohorts.
summariseTreatmentFromConceptSet	This function is used to summarise the dose table over multiple cohorts.