# Chemical Metrics for Microbial Communities

## Documentation for package ‘chem16S’ version 1.2.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

chem16S-package | Chemical metrics for microbial communities
chem16S | Chemical metrics for microbial communities
chem16S-data | 'phyloseq-class' objects generated using the DADA2 Pipeline Tutorial
chemlab | Formatted labels for chemical metrics
get_metadata | Template function for metadata
get_metrics | Calculate chemical metrics of community reference proteomes
get_metric_byrank | Chemical metrics for taxa aggregated to a given rank
map_taxa | Map taxonomic names to NCBI or GTDB taxonomy
mouse.GTDB_220 | 'phyloseq-class' objects generated using the DADA2 Pipeline Tutorial
mouse.RDP | 'phyloseq-class' objects generated using the DADA2 Pipeline Tutorial
mouse.silva | 'phyloseq-class' objects generated using the DADA2 Pipeline Tutorial
physeq | Process 'phyloseq-class' objects to calculate chemical metrics
plot_metrics | Plot chemical metrics of community reference proteomes
plot_ps_metrics | Process 'phyloseq-class' objects to calculate chemical metrics
plot_ps_metrics2 | Process 'phyloseq-class' objects to calculate chemical metrics
ps_metrics | Process 'phyloseq-class' objects to calculate chemical metrics
ps_taxacounts | Process 'phyloseq-class' objects to calculate chemical metrics
read_RDP | Read and filter RDP Classifier output