R CMD BATCH?update.packages() fails.This FAQ is for the Windows port of R: it describes features specific to that version. The main R FAQ can be found at
The information here applies only to recent versions of R for Windows. It is biased towards users of 64-bit Windows.
Go to any CRAN site (see https://cran.r-project.org/mirrors.html for a list), navigate to the bin/windows/base directory and collect the file(s) you need. The current release is distributed as an installer ‘R-4.0.2-win.exe’ of about 65MB.
There are also links on that page to the ‘r-patched’ and ‘r-devel’ snapshots. These are frequently updated builds of development versions of R. The ‘r-patched’ build includes bug fixes to the current release, and ‘r-devel’ contains these as well as changes that are planned to eventually make it into the next ‘x.y.0’ release.
Current binary versions of R are known to run on Windows 7 or later, including on 64-bit versions: See Can I use R on 64-bit Windows?. Windows XP is no longer supported.
We only test on versions of Windows currently supported by Microsoft, mainly 64-bit Windows 7, Windows Server 2008 and Windows 10.
Your file system must allow case-honouring long file names (as is likely except perhaps for some network-mounted systems). An installation takes up to 150MB of disk space.
If you want to be able to build packages from sources, we recommend that
you choose an installation path not containing spaces. (Using a path
with spaces in will probably work, but is little-tested.) Users
installing for a single user using an account with administrator
rights1 should consider
installing into a non-system area (such as C:\R). Installing to
a network share (a filepath starting with \\machine\...) is not
supported: such paths will need to mapped to a network drive.
To install use ‘R-4.0.2-win.exe’. Just double-click on the icon and follow the instructions. If you have an account with Administrator privileges you will be able to install R in the Program Files area and to set all the optional registry entries; otherwise you will only be able to install R in your own file area. You may need to confirm that you want to proceed with installing a program from an ‘unknown’ or ‘unidentified’ publisher.
After installation you should choose a working directory for R. You will have a shortcut to Rgui.exe on your desktop and/or somewhere on the Start menu file tree, and perhaps also in the Quick Launch part of the taskbar (Vista and earlier). Right-click each shortcut, select Properties... and change the ‘Start in’ field to your working directory. (If your account was not the one used for installation, you may need to copy the shortcut before editing it.)
On some systems you will have two shortcuts, one for 32-bit with a label
starting R i386 and one for 64-bit starting R x64
(see Should I run 32-bit or 64-bit R?)
You may also want to add command-line arguments at the end of the
Target field (after any final double quote, and separated by a
space), for example --sdi --max-mem-size=1G. You can also set
environment variables at the end of the Target field, for example
R_LIBS=p:/myRlib, and if you want to ensure that menus and
messages are in (American) English, LANGUAGE=en.
Relates to earlier installers, removed in R 2.11.0.
The normal way to customize the installation is by selecting components from the wizards shown by the installer. However, sysadmins might like to install R from scripts, and the following command-line flags are available for use with the installer.
only show the installation progress window and error messages.
only show error messages.
set the default installation directory
set the default Start-menu group name
set the initial list of components: Components are named ‘main’, ‘i386’, ‘x64’ and ‘translations’.
It is also possible to save the settings used to a file and later reload those settings using
save the settings to the specified file. Don’t forget to use the quotes if the filename contains spaces.
instructs the installer to load the settings from the specified file after having checked the command line.
A successful installation has exit code 0: unsuccessful ones may give 1, 2, 3, 4 or 5. See the help for Inno Setup (http://jrsoftware.org/) for details.
We have some facilities for building a customized installer, in particular to add packages to the installer. See the ‘R Installation and Administration’ manual in the subsection ‘Building the installers’.
Just double-click on the shortcut you prepared at installation.
If you want to set up another project, make a new shortcut or use the existing one and change the ‘Start in’ field of the Properties.
You may if you prefer run R from the command line of any shell you use,
for example a ‘Command Prompt’ or a port of a Unix shell such as
tcsh or bash. (The command line can be anything you
would put in the Target field of a shortcut, and the starting directory
will be the current working directory of the shell. Note that the R
executables are not by default added to the PATH.) People running
from a terminal usually prefer to run Rterm.exe and not
Rgui.exe.
Yes, with care. A basic R installation is relocatable, so you can burn an image of the R installation on your hard disc or install directly onto a removable storage device such as a flash-memory USB drive.
Running R does need access to a writable temporary directory and to a home directory, and in the last resort these are taken to be the current directory. This should be no problem on a properly configured version of Windows, but otherwise does mean that it may not be possible to run R without creating a shortcut starting in a writable folder.
Normally you can do this from the ‘Programs and Features’ group in the Control Panel. If it does not appear there, run unins000.exe in the top-level installation directory. On recent versions of Windows you may be asked to confirm that you wish to run a program from an ‘unknown’ or ‘unidentified’ publisher.
Uninstalling R only removes files from the initial installation, not (for example) packages you have installed or updated.
If all else fails, you can just delete the whole directory in which R was installed.
That’s a matter of taste. For most people the best thing to do is to
uninstall R (see the previous Q), install the new version, copy any
installed packages to the library folder in the new installation, run
update.packages(checkBuilt=TRUE, ask=FALSE) in the new R and then
delete anything left of the old installation. Different versions of R
are quite deliberately installed in parallel folders so you can keep old
versions around if you wish.
For those with a personal library (folder R\win-library\x.y
of your home directory, R\win64-library\x.y on 64-bit
builds), you will need to update that too when the minor version of R
changes (e.g. from 4.0.2 to 4.1.0). A simple way to do so is to
copy (say) R\win-library\4.0 to R\win-library\4.1 before
running update.packages(checkBuilt=TRUE, ask=FALSE).
Indeed there is. It is set by the command-line flag
--max-mem-size (see How do I install R for Windows?) or by
environment variable R_MAX_MEM_SIZE.
For a 64-bit build of R it defaults to the amount of RAM.
For a 32-bit build of R it defaults to the smaller of the amount of physical RAM in the machine and 0.5GB less than the limit on user virtual memory for a process (most often 2GB when using a 32-bit edition of Windows).
Use ?Memory and ?memory.size for information about memory
usage. The limit can be raised (if possible) by calling
memory.limit within a running R session.
The 32-bit executables support up to 3GB of user address space per
process under suitably enabled versions of 32-bit Windows (see
https://docs.microsoft.com/en-gb/windows/desktop/Memory/physical-address-extension,
https://docs.microsoft.com/en-gb/windows/desktop/Memory/4-gigabyte-tuning;
this is not enabled by default). On such systems, the default for
--max-mem-size is the smaller of the amount of RAM and 2.5GB. On
all but the earliest 64-bit versions of Windows the user address space
for a 32-bit process is 4GB, and there the default for
--max-mem-size is the smaller of the amount of RAM and 3.5GB.
Create a separate shortcut for each project: see Q2.5. All the paths to files used by R are relative to the starting directory, so setting the ‘Start in’ field automatically helps separate projects.
Alternatively, start R by double-clicking on a saved .RData file in the directory for the project you want to use, or drag-and-drop a file with extension .RData onto an R shortcut. In either case, the working directory will be set to that containing the file.
It depends what you want to print.
dev.print with suitable arguments (see its help page: most likely
dev.print(win.graph) will work).
help(fn_name, help_type="PDF").
R CMD BATCH?Yes: use R CMD BATCH --help or ?BATCH for full details.
You can also set up a batch file using Rterm.exe. A sample
batch file might contain (as one line)
path_to_R\bin\x64\Rterm.exe --no-restore --no-save < %1 > %1.out 2>&1
The purpose of 2>&1 is to redirect warnings and errors to the
same file as normal output.
Yes. ESS has for a long time supported R under Windows: it does so by
running Rterm.exe without a visible console.
For help with ESS, please send email to ESS-help@stat.ethz.ch, not the R mailing lists.
Several places in the documentation use these terms.
The working directory is the directory from which Rgui or
Rterm was launched, unless a shortcut was used when it is given
by the ‘Start in’ field of the shortcut’s properties. You can find this
from R code by the call getwd().
The home directory is set as follows: If environment variable
R_USER is set, its value is used. Otherwise if environment
variable HOME is set, its value is used. After those two
user-controllable settings, R tries to find system-defined home
directories. It first tries to use the Windows "personal" directory
(typically C:\Users\username\Documents). If that fails, if both
environment variables HOMEDRIVE and HOMEPATH are set (and
they normally are), the value is ${HOMEDRIVE}${HOMEPATH}. If
all of these fail, the current working directory is used.
You can find this from R code by Sys.getenv("R_USER") or
normalizePath("~"), ‘~’ being Unix notation for the home directory.
Environment variables can be set for Rgui.exe and
Rterm.exe in three different ways.
Rgui you could have
"path_to_R\bin\x64\Rgui.exe" HOME=p:/ R_LIBS=p:/myRlib
R_LIBS=p:/myRlib
If you have permission to do so, you can also create an environment file etc\Renviron.site and set environmental variables in that file in the same way. This is useful for variables which should be set for all users and all usages of this R installation. (Their values can be overridden in a .Renviron file or on the command line.)
See ?Startup for more details of environment files.
The order of precedence for environmental variables is the order in which these options are listed, that is the command line then .Renviron then the inherited environment.
How did you specify it? Backslashes have to be doubled in R character strings, so for example one needs ‘"d:\\R-4.0.2\\library\\xgobi\\scripts\\xgobi.bat"’. You can make life easier for yourself by using forward slashes as path separators: they do work under Windows. You should include the file extension (e.g. ‘"xgobi.bat"’ rather than just ‘"xgobi"’); sometimes this isn’t shown in Windows Explorer, but it is necessary in R.
A simple way to avoid these problems is to use the function
file.choose() to invoke the standard Windows file selection
dialog. If you select a file there, the name will be passed to R in
the correct format.
Another possible source of grief is spaces in folder names. We have
tried to make R work on paths with spaces in, but many people writing
packages for Unix do not bother. So it is worth trying the alternative
short name (something like ‘PROGRA~1’; you can get it as the
‘MS-DOS name’ from the Properties of the file on some versions of
Windows, and from dir /X in a ‘Command Prompt’ window),
and using the function shortPathName from R code.
Not when R itself is running.
When you run the R installer, there are options (under ‘Select Additional Tasks’) to ‘Save version number in registry’ and (for Administrator installs) ‘Associate R with .RData files’.
If you tick the first option, the following string entries are added to the Windows registry:
HKEY_LOCAL_MACHINE\Software\R-core\R\Current Version
contains the version number, currently 4.0.2.
HKEY_LOCAL_MACHINE\Software\R-core\R\[version]\InstallPath
(where [version] is currently 4.0.2) contains the path to the R
home directory.
If you do not have administrative privileges on the machine while
running the installer, then the entries are created under
HKEY_CURRENT_USER. The same entries are also created under
Software\R-core\R32 or Software\R-core\R64, for 32- and
64-bit R respectively.
If you tick the second option (shown with administrative privileges
only) (‘Associate R with .RData files’) then entries are created
under HKEY_CLASSES_ROOT\.RData and
HKEY_CLASSES_ROOT\RWorkspace.
After installation you can add the Registry entries by running
RSetReg.exe in a sub-folder of the bin folder, and remove
them by running this with argument /U. Note that this requires
administrative privileges unless run with argument /Personal and
neither sets up nor removes the file associations.
Directly, no. See packages such as RDCOMClient from Omegahat
(source and binary packages available from
https://www.stats.ox.ac.uk/pub/RWin/)
and the non-Free project at http://www.statconn.com/.
for example update.packages() and the menu items on the Packages menu.
We have had several reports of this, although they do work for us on all of our machines. There are two known possible causes.
(a) A proxy needs to be set up: see ?download.file.
(b) Firewall settings are blocking the R executables from contacting the Internet (but this should result in informative error messages from the firewall program).
This has not been reported for a few years, but used to happen regularly. All the occurrences we have solved have been traced to faulty versions of ‘msvcrt.dll’: we have installed a workaround that seems to avoid this. A few other people have discovered this was caused by desktop switcher and keyboard macro programs, for example ‘Macro Magic’ and ‘JS Pager’.
This is a warning which indicates that R has taken action to correct the action of some (non-R) DLL which has just been loaded and has changed the floating point control word (in its initialization code) to a setting incompatible with that needed for R. This is not good practice on the part of the DLL, and often indicates that it needs to be updated.
Unfortunately, because DLLs may themselves load other DLLs it is not possible for R to track which DLL caused the problem.
See also ?dyn.load.
Some users have found that Rgui.exe fails to start, exiting with
a “Floating-point invalid operation” or other low level error. This
error may also happen in the middle of a session. In some cases where
we have tracked this down, it was due to bugs in the video driver on the
system in question: it makes changes to the floating point control word
which are incompatible with R. (Good practice would restore the control
word to the state it was in when the driver code was called, and R
tries hard to correct this before running its own code.) For example,
one user reported that the virtual screen manager JSP2 caused this
crash.
These errors are essentially impossible for us to fix or work around beyond the measures already taken. The only solution we know of is for the user to replace the buggy system component that is causing the error.
This is a misreading of Windows’ confusing Task Manager. R’s computation is single-threaded, and so it cannot use more than one CPU. What the task manager shows is not the usage in CPUs but the usage as a percentage of the apparent total number of CPUs. We say ‘apparent’ as it treats so-called ‘hyper-threaded’ CPUs such as two CPUs per core, and most modern CPUs have at least two cores.
You can see how many ‘CPU’s are assumed by looking at the number of graphs of ‘CPU Usage History’ on the ‘Performance’ tab of the Windows Task manager.
It does. A few issues have been reported that are related to the way accounts and file permissions work. (These are not specifically R issues, but changes in user experiences.)
Earlier versions of Windows had user and Administrator accounts, and user accounts could be give administrative privileges (by being added to the local Administrators group) and so write permission over system areas such as c:\Program Files. R would be installed either by users in their own file space or by an account with administrator privileges into a system area. Sysadmins could set policies for user accounts, and you might for example have needed to be a ‘Power User’ to install software at all.
Vista and later normally disable the Administrator account and expect software installation to be done by an account which is in the local Administrator group with ‘admin approval mode’ turned on. (The Administrator account by default has it turned off.) Unlike (say) Windows XP, such accounts do not run programs with full administrator privileges, and this is where the issues arise. These OSes have the concept of ‘over-the-shoulder’ credentials: if you are running without full administrator privileges and do something which needs them you may be prompted with one or more security-check dialog boxes, and may be required to provide administrator credentials or confirm that you really want to take that action.
Vista and later will report that the R installer has an ‘unidentified publisher’ or ‘unknown publisher’ and ask if it should be run. System administrators can disable installing applications from non-trusted sources, in which case you will have to persuade them that R is trustworthy, or digitally sign the R installer yourself, or (unless this is also disabled) run the installer from a standard account and install into your own file area. (The same issues apply to the .msi version of the installer.)
If you install R as a standard user into your own file space and use it under the same account, there are no known permission issues.
If you use the default Administrator account (without ‘admin approval mode’ being turned on) and install/update packages (in the system area or elsewhere), no issues are known.
If you use an account in the local Administrators group in ‘admin
approval mode’ (which is the intended norm under these OSes),
installation will make use of ‘over-the-shoulder’ credentials. You will
run into problems if you try installing (including updating) packages in
the main R library. (It would be nice if at that point R could use
over-the-shoulder credentials, but they apply to processes as a whole.
Vista and later disallow creating .dll files in the system area
without credentials.) There are several ways around this.
For an installation to be used by a single user, the simplest way is to make use of a ‘personal library’: See I don't have permission to write to the R-4.0.2\library directory.
For a site installation, you can create a site-wide library directory
anywhere convenient, and add it to the default package search path for
all users via R_LIBS_SITE in etc\Renviron.site. See What are HOME and working directories?. There is a standard location for a
site library, the site-library directory in the top-level R
folder (which you would need to create with full control for the R
installation account). This will be used for installation in preference
to the main library folder if it exists.
This approach will not allow you to update the recommended packages unless you ‘Run as administrator’: we suggest you use an R session running under Administrator privileges when updating those.
Another issue with Vista was that the standard POSIX ways that R uses
(e.g. in file.info and file.access) to look at file
permissions no longer work reliably. file.access was re-written
to work with Windows NT-based security and the new version seems much
more reliable with these OSes (but still not 100% correct).
R may make use of directional quotes that are not always rendered
correctly by Windows: these are used by default only by Rgui in
suitable locales (not Chinese/Japanese/Korean).
Whether these are used in R output (from functions sQuote and
dQuote) is controlled by getOption("useFancyQuotes") whose
default is FALSE except for the Rgui console. There are
two potential problems with rendering directional quotes. The first is
with running Rterm: in European locales the ‘Windows Command
Prompt’ is by default set up to use MS-DOS and not Windows default
encodings: this can be changed via chcp, with chcp
1252 being appropriate for Western European (including English)
locales. The other is that the default raster fonts only include
directional single quotes and not directional double quotes (which will
probably be rendered as a filled rectangle).
Directional quotes will also be used in text help which is normally displayed in R’s internal pager: these may not be rendered correctly in an external pager. They are also used in HTML help, where most browsers use fonts which render them correctly.
The font used can affect whether quotes are rendered correctly. The
default font in the Rgui console and internal pager is
Courier New, which has directional quotes on all the systems we
tried. Lucida Console which has elegant glyphs for directional
quotes (but seems rather light unless ClearType is in use):
Consolas is another font which we often select when ClearType is
in use. Non-TrueType fonts such as Courier and FixedSys
lack directional double quotes on the systems we tried.
There is a related problem with using Sweave output in
Rgui, for LaTeX needs to be told about the encoding of
directional quotes by including in the LaTeX preamble e.g. (for a
Western European locale)
\usepackage[cp1252]{inputenc}
or their use suppressed by options(useFancyQuotes=FALSE).
Where tilde does not appear on the main keyboard, it can normally be
accessed by pressing AltGr (the right Alt key) plus some other key.
This is ] in Canadian (multilingual), German and Scandinavian
layouts, 1 in Eastern Europe, [ in Portuguese, 4 or
5 in Spanish, / in Francophone Belgian, and so on. You
can explore those for your keyboard via the ‘On-Screen Keyboard’ (under
Ease of access on Windows 7).
On all Windows versions you should be able to get tilde by holding the down the left Alt key and typing 0126 on the numeric keypad (if you have one), then releasing the Alt key.
The 32-bit build of R for Windows will run on both 32-bit and 64-bit2 versions of Windows. 64-bit versions of Windows run 32-bit executables under the WOW (Windows on Windows) subsystem: they run in almost exactly the same way as on a 32-bit version of Windows, except that the address limit for the R process is 4GB (rather than 2GB or perhaps 3GB).
When R is installed on 64-bit Windows there is the option of installing 32- and/or 64-bit builds: the default is to install both. If you are using the 32-bit build, replace ‘x64’ by ‘i386’ in the examples in this FAQ.
Obviously, only relevant if you are using 64-bit Windows.
For most users we would recommend using the ‘native’ build, that is the 32-bit version on 32-bit Windows and the 64-bit version of 64-bit Windows.
The advantage of a native 64-bit application is that it gets a 64-bit address space and hence can address far more than 4GB (how much depends on the version of Windows, but in principle 8TB). This allows a single process to take advantage of more than 4GB of RAM (if available) and for R’s memory manager to more easily handle large objects (in particular those of 1GB or more). The disadvantages are that all the pointers are 8 rather than 4 bytes and so small objects are larger and more data has to be moved around, and that less external software is available for 64-bit versions of the OS. The 64-bit compilers are able to take advantage of extra features of all x86-64 chips (more registers, SSE2/3 instructions, …) and so the code may run faster despite using larger pointers. The 64-bit build is nowadays usually slightly faster than the 32-bit build on a recent CPU (Intel Core 2 or later or AMD equivalent).
For advanced users the choice may be dictated by whether the contributed
packages needed are available in 64-bit builds (although CRAN only
offers 32/64-bit builds). The considerations can be more complex: for
example 32/64-bit RODBC need 32/64-bit ODBC drivers respectively,
and where both exist they may not be able to be installed together. An
extreme example is the Microsoft Access/Excel ODBC drivers: if you have
installed 64-bit Microsoft Office you can only install the 64-bit
drivers and so need to use 64-bit RODBC and hence R. (And
similarly for 32-bit Microsoft Office.)
Obviously, only relevant if the machine is running a 64-bit version of Windows – simply select both when using the installer. You can also go back and add 64-bit components to a 32-bit install, or vice versa.
For many Registry items, 32- and 64-bit programs have different views of the Registry, but clashes can occur. The most obvious problem is the file association for .RData files, which will use the last installation for which this option is selected, and if that was for an installation of both, will use 64-bit R. To change the association the safest way is to edit the Registry entry ‘HKEY_CLASSES_ROOT\RWorkspace\shell\open\command’ and replace ‘x64’ by ‘i386’ or vice versa.
This has often been reported after an upgrade.
The R installer does not put Rcmd.exe (nor any other R
executable) on your PATH. What seems to have happened is that
people did this for themselves in the past, upgraded R (which by default
will install to a different location) and un-installed the old version
of R. If you do that (or install R for the first time), you need to
edit the PATH.
The element you want to add to the path is something like
c:\Program Files\R\R-4.0.0\bin\x64
for 64-bit Rcmd.exe, replacing x64 by i386 for
32-bit.
How you set the path depends on your OS version. Under recent versions, go to ‘User Accounts’ in the Control Panel, and select your account and then ‘Change my environment variables’. (System policies can prevent end users making changes.)
An alternative is to set the PATH in the shell you are running
(Rcmd.exe is a command-line program). For those using the
standard Windows ‘Command Prompt’ Duncan Murdoch suggested:
The simple way to do it just for the command prompt is to write a little
batch file setpath.bat containing
set PATH=newstuff;%PATH%
and then run cmd with
CMD /K setpath.bat
Only a limited range of languages is supported, currently Catalan, both Simplified and Traditional Chinese, Czech, Danish, Dutch, Finnish, French, German, Greek, Hebrew, Hungarian, Italian, Japanese, Korean, Norwegian, Polish, Portuguese (Brazil), Portuguese (Portugal), Russian, Slovenian, Spanish (Spain) and Ukranian.
The default behaviour of R is to try to run in the language you run Windows in.
Apparently some users want3
Windows in their native language, but not R. To do so, set
LANGUAGE=en as discussed in Q2.2 and Q2.15, or in the
Rconsole file.
Suitable versions of Windows support what it calls ‘East Asian’ languages, but e.g. Western installations of Windows often do not have such support. So we need to assume that your copy of Windows does.
Both Rterm.exe and Rgui.exe support single- and
double-width characters. It will be necessary to select suitable fonts
in files Rconsole and Rdevga (see ?Rconsole or the
comments in the files: the system versions are in the etc
folder); in the latter you can replace Arial by Arial
Unicode MS, and we tried FixedSys and MS Mincho in
Rconsole. (Note that Rdevga only applies to Windows
graphics devices and not, say, to pdf.)
Note that it is important that the console font uses double-width
characters for all CJK characters (as that is what the width table used
assumes): this is true for the fonts intended for CJK locales but not
for example for Lucida Console or Consolas.
You do need to ensure that R is running in a suitable locale: use
Sys.getlocale() to find out. (CJK users may be used to their
language characters always being available, which is the case for
so-called ‘Unicode’ Windows applications. However, R is primarily
written for Unix-alikes and is not therefore ‘Unicode’ in the Windows
sense.) You can find suitable locale names from
https://msdn.microsoft.com/en-us/library/39cwe7zf%28v=vs.80%29.aspx
and https://msdn.microsoft.com/en-us/library/cdax410z%28v=vs.80%29.aspx
beware that "Chinese" is Traditional Chinese (code page 950,
Big5) and "chs" is needed for Simplified Chinese (code page 936,
GB2312).
When using Rterm the window in which it is run has to be set
up to use a suitable font (e.g. Lucida Console or
Consolas, not the OEM raster fonts) and a suitable codepage
(which for the Windows Cmd shell can be done using chcp).
Precisely, you selected English for installation! The language of the installer has nothing to do with the language used to run R: this is completely standard Windows practice (and necessary as different users of the computer may use different languages).
The language R uses for menus and messages is determined by the
locale: please read the appropriate manual (‘R Installation and
Administration’) for the details. You can ensure that R uses English
messages by appending LANGUAGE=en to the shortcut you use to
start R, or setting it in the Rconsole file.
for example, in the console and to annotate graphs. Similar comments apply to any non-Western-European language.
With suitable fonts, this should just work. You will need to set MS
Mincho or MS Gothic as the console font to ensure that single- and
double-width characters are handled correctly. The default graphics
fonts for the windows() graphics device can handle most common
Japanese characters, but more specialized fonts may need to be set.
(See Q5.2 for how to set fonts: the console font can also be set from
the ‘GUI preferences’ menu item.) The help for windowsFonts has
examples of selecting Japanese fonts for the windows() family of
devices.
In addition, the Hershey vector fonts (see ?Hershey,
?Japanese and demo(Japanese)) can be used on any graphics
device to display Japanese characters.
To use non-Latin-1 characters in the postscript graphics device,
see its help page (which also applies to pdf).
You need to specify a font in Rconsole (see Q5.2) that supports the encoding in use. This used to be a problem in earlier versions of Windows, but now it is hard to find a font which does not.
Support for these characters within Rterm depends on the
environment (the terminal window and shell, including locale and
codepage settings) within which it is run as well as the font used by
the terminal window. Those are usually on legacy DOS settings and need
to altered.
In most cases they actually are, but by Windows. Setting the locale or
the LANGUAGE environment variable does not change the Windows
setting of its ‘UI language’. Vista and later talk about the ’UI
language’ and the ’system locale’ for setting the language used for
‘non-Unicode’ programs (on the ’Administrative’ tab in Windows 7).
If you have Windows running completely in say French or Chinese these settings are likely to be consistent. However, if you try to run Windows in one language and R in another, you may find the way Windows handles internationalization slightly odd.
Yes, but you will need a lot of tools to do so, unless the author or the
maintainers of the bin/windows/contrib section on CRAN have been
kind enough to provide a binary version for Windows as a
.zip file, or the package is a simple one involving no compiled
code (and binary versions are usually available for simple
packages).
You can install binary packages either from a repository such as
CRAN or from a local .zip file by using install.packages:
see its help page. There are menu items on the Packages menu to
provide a point-and-click interface to package installation. The
packages for each minor (4.x.?) version will be stored in a separate area,
so for R 4.0.? the files are in bin/windows/contrib/4.0.
If there is no binary package or that is not up-to-date or you prefer
compiling from source, read the ‘R Installation and Administration’
manual section on ‘Add-on Packages’. Source packages which contain no
C/C++/Fortran code which needs compilation can simply be installed by
install.packages(type = "source") or R CMD INSTALL
pkgname at a Windows command prompt. For packages with code that needs
compilation you will need to collect and install several tools: you can
download them via the portal at
https://cran.r-project.org/bin/windows/Rtools/. Once you have done
so, just run R CMD INSTALL pkgname at a Windows command
prompt. To check the package (including running all the examples on its
help pages and in its test suite, if any) use R CMD check
pkgname: see the ‘Writing R Extensions’ manual.
Note that setting up Windows to install a source package that needs compilation is rather tricky; please do ensure that you have followed the instructions exactly. At least 90% of the questions asked are because people have not done so.
If you have a source package that is known to work on a Unix-alike system, you can try the automated Windows binary package builder documented at https://win-builder.r-project.org.
You can install packages anywhere and use the environment variable
R_LIBS (see How do I set environment variables?) to point to
the library location(s).
Suppose your packages are installed in p:\myRlib. Then you can EITHER
set the environment variable R_LIBS to p:/myRlib before starting R
OR use a package by, e.g.
library(mypkg, lib.loc="p:/myRlib")
You can also have a personal library, which defaults to the directory
R\win-library\x.y of your home directory for versions
x.y.z of R. This location can be changed by setting the
environment variable R_LIBS_USER, and can be found from inside R
by running Sys.getenv("R_LIBS_USER"). This will only be used if
it exists so you may need to create it: you can use
dir.create(Sys.getenv("R_LIBS_USER"), recursive = TRUE)
to do so. If you use install.packages and do not have permission
to write to the main or site library, it should offer to create a personal
library for you and install the packages there. This will also happen
if update.packages offers to update packages for you in a library
where you do not have write permission.
There can be additional security issues under Windows Vista and later: See Does R run under Windows Vista?. In particular, the detection that a standard user has suitable permissions appears to be unreliable under Vista, so we recommend that you do create a personal directory yourself.
This question applied to the pre-2.10.0 HTML help system, which has been replaced.
This question applied to the pre-2.10.0 search system, which has been replaced.
Is the package installed for this version of R? Packages need to have prepared for R 4.0.0 or later.
You can tell the version the package was compiled for by looking at the ‘Built:’ line in its DESCRIPTION file.
For a small number of binary packages you need to install additional
software and have its DLLs in your PATH. Windows will normally
give an informative message about a certain DLL not being found. See
https://cran.r-project.org/bin/windows/contrib/4.0/ReadMe for a
listing of some of these packages (notably RGtk2,
cairoDevice, rggobi, rJava, rjags and some
of the packages connecting to databases).
For package tcltk to work (try demo(tkdensity) or
demo(tkttest) after library(tcltk)) you need to have Tcl/Tk
installed. This is part of the R installation, so it should be there.
However, if you have the environment variable MY_TCLTK set to a
non-empty value, it is assumed that you want to use a different Tcl/Tk
8.6.x installation with the path to its bin directory given by
value of MY_TCLTK, and that this is set up correctly (with
TCL_LIBRARY set if needed). Note that you do need 8.6.x and not
8.5.x nor 8.4.x, and you do need the architecture to match, that is a
32-bit or 64-bit build of Tcl/Tk to match the R build in use. (There is
no guarantee that a 64-bit build will work: it depends on the layout it
uses.)
In the past several package authors have suggested using ActiveTcl
(https://www.activestate.com/Products/activetcl/) as a way to
get Tcl/Tk extensions (but the support files do contain the most
commonly used TkTable and BWidget extensions). This could
be used by setting (for a default install)
MY_TCLTK=c:/Tcl/bin
but current versions do not by default contain any extra
extensions (although they may be downloaded via the Teacup
facility) and this only works for 32-bit R.
This question was much more relevant prior to version 2.10.0.
They may still not work between packages installed in different libraries if the HTTP server has been disabled: the remedy is not to do that!
update.packages() fails.You may not be able to update a package which is in use: Windows ‘locks’
the package’s DLL when it is loaded. So use update.packages()
(or the menu equivalent) in a new session.
If you put library(foo) in your .Rprofile you will need to
start R with --vanilla to be able to update package foo.
If you set R_DEFAULT_PACKAGES to include foo, you will
need to unset it temporarily.
It has been reported that some other software has interfered with the installation process by preventing the renaming of temporary files, Google Desktop being a known example.
as shown in the Select repositories... item on the
Packages menu?
This reads from the tab-delimited file R_HOME\etc\repositories, which you can edit, or put a modified copy at .R\repositories in your HOME directory (see What are HOME and working directories?).
This was about Compiled HTML help, which has not been supported since R 2.10.0.
We presume you want to do this for some special purpose: R’s help system will not make use of them, links across library directories will not work (unlike R < 2.10.0), ambiguous links will be resolved at install time and missing links will be broken (previous versions used JavaScript to look for them at run time). But if you still want them, here is how to do it.
Static HTML pages are not part of the binary distribution, so you will need to install R and/or packages from their sources. To install just a few packages with static HTML pages use
R CMD INSTALL --html pkg1 pkg2 …
To install R itself with static HTML pages you need to build it from the sources for yourself. Change the following line in file MkRules.local (after copying MkRules.dist to MkRules.local if that has not already been done).
# set this to YES to build static HTML help BUILD_HTML = NO
and them all packages installed by that build of R will (by default) be installed with static HTML pages.
Presumably one not available on CRAN, BioC or a similar repository.
If you have a source package that is known to work on a Unix-alike system, you can try the automated Windows binary package builder documented at https://win-builder.r-project.org. If the package is not yours, please remember to change the maintainer address so the results go to you and not the author(s)!
However, if a CRAN package is not available in binary form, this usually means that there is a problem with some dependent package or external software (often mentioned in the @ReadMe file in the binary repository directory). You can email R-windows@r-project.org expressing a wish for such a package to be ported—the maintainers will take such wishes into account when prioritizing work on binary packages.
In many cases installing packages from the sources is not at all difficult (it is simple if the package contains no compiled code), so please attempt that for yourself before requesting help from the busy volunteers.
Here are three possible reasons:
You are simply impatient, and need to wait until the binary package has been built and propagated to the CRAN mirror you are using. This normally (but not always) happens within 24 hours. Sometimes mirrors do get behind (especially unofficial ones), so you could try another mirror. (Mirror statistics are linked near the top of the CRAN mirror page at https://cran.r-project.org/mirrors.html.)
The latest version of the package might require a later version of R than the one you are using. You can check on the package’s HTML page on CRAN, and update your R if needed.
Your R might be too old. Binary packages for the 3.x series were built (if possible) whilst 3.(x+1) is current, but building stops once 3.(x+2) reaches alpha (pre-release, about a month before release). At the release of 4.0.0, packages for 3.5 were no longer built, and those for 3.6 will be built until about Mar 2021. You can always try installing from the sources.
How old is it? The CRAN policy is to archive binary packages two years after the 3.x series is closed. Other repositories may do so sooner.
If you are using an R version that old we advise you to update your R, but you do also have the option of installing packages from their source.
Packages without compiled code nor a configure.win script will run on both 32- and 64-bit R.
Packages with compiled code but no configure.win nor
src/Makefile.win file will be built for both when running on a
64-bit version of Windows if both versions of R are installed.
An empty configure.win is treated in the same way as if none
existed. Also, there is a list of packages known to have an
architecture-independent configure.win hardcoded into R
CMD INSTALL, and for these packages, both architectures will be built
under the above conditions. Other packages can be installed with
configure.win run for just the first architecture by using option
--force-biarch.
Any package can be installed for first one architecture and then the other with option --merge-multiarch, but the package source must be a tarball (and as before, running on a 64-bit version of Windows with both versions of R installed).
Finally, a package without a src/Makefile.win file and no or
empty or architecture-independent configure.win file can be
installed for both architectures from 32-bit Windows if the 64-bit
components were selected when R was installed and option
--compile-both is given. Obviously, only the 32-bit
installation can be tested.
Rgui.exe
and Ctrl-break or Ctrl-C in Rterm.exe:
Ctrl-C is used for copying in Rgui.exe.
Rgui.exe, the menu item
‘Help | Console’ will give details. For Rterm.exe see file
README.rterm.
source()) can be specified with
either "/" or "\\".
system() is slightly different: see its help page and that
of shell().
You have read the file README.R-4.0.2? There are file menus on
the R console, pager and graphics windows. You can source and save from
those menus, and copy the graphics to png, jpeg,
bmp, postscript, PDF or metafile. There are
right-click menus giving shortcuts to menu items, and optionally
toolbars with buttons giving shortcuts to frequent operations.
If you resize the R console the options(width=) is automatically
set to the console width (unless disabled in the configuration file).
The graphics has a history mechanism. As README.R-4.0.2 says:
‘The History menu allows the recording of plots. When plots have been recorded they can be reviewed by PgUp and PgDn, saved and replaced. Recording can be turned on automatically (the Recording item on the list) or individual plots can be added (Add or the INS key). The whole plot history can be saved to or retrieved from an R variable in the global environment. The format of recorded plots may change between R versions. Recorded plots should not be used as a permanent storage format for R plots.
There is only one graphics history shared by all the windows devices.’
The R console and graphics windows have configuration files stored in
the RHOME\etc directory called Rconsole and Rdevga;
you can keep personal copies in your HOME directory. They contain
comments which should suffice for you to edit them to your
preferences. For more details see ?Rconsole.
There is a GUI preferences editor invoked from the Edit menu which
can be used to edit the file Rconsole.
The graphics system asks Windows for the number of pixels per inch in
the X and Y directions, and uses that to size graphics (which in R are
in units of inches). Sometimes the answer is a complete invention, and
in any case Windows will not know exactly how the horizontal and
vertical size have been set on a monitor which allows them to be
adjusted. You can specify correct values either in the call to
windows or as options: see ?windows. (Typically these are
of the order of 100.)
On one of our systems, the screen height was reported as 240mm, and the width as 300mm in 1280 x 1024 mode and 320mm in 1280 x 960 and 1600 x 1200 modes. In fact it was a 21" monitor and 400mm x 300mm!
This is less common with LCD screens but not unknown, particularly if they are not running at their native resolution.
You may want to do this from within a function, for example when calling ‘identify’ or ‘readline’. Use the function ‘bringToTop()’. With its default argument it brings the active graphics window to the top and gives it focus. With argument ‘-1’ it brings the console to the top and gives it focus.
This works for Rgui.exe in MDI and SDI modes, and can be used for
graphics windows from Rterm.exe (although Windows may not always
act on it).
Both Rgui and Rterm support TAB completion.
Hitting TAB whilst entering a command line completes the current
‘word’ as far as is unambiguously possible. Hitting TAB a second
time then shows a list of possible completions (or the first few if
there are many): the user can then enter one or more characters and hit
TAB again.
What is it ‘completing’? There are two modes: within an unterminated
(single- or double-) quoted expression it completes file
paths.4 Otherwise, it is completing R expressions: most obviously
it will match visible R object names and keywords, so apr followed
by TAB will (in a vanilla session) complete to apropos.
After a function name and parenthesis (e.g. apropos() it will
complete argument names (and =), and after $ or @ it
will complete list components or slot names respectively.
This feature can be turned off: Rgui has two menu items to do
so, and setting the environment variable R_COMPLETION to
FALSE turns it off completely for both Rgui and
Rterm. Further, the behaviour can be fine-tuned: to see the
settings available use
?rc.settings
which also explains how the various types of completion work.
This feature is very similar to the completion available in the
readline-based command line interface on Unix-alikes: the macOS
GUI R.app has a different completion scheme.
Have you changed the working directory?: see Q6.2.
Use the ‘File | Change Dir...’ menu item to select a new working directory: this defaults to the last directory you loaded a file from. The workspace is saved in the working directory. You can also save a snapshot of the workspace from the ‘Save Workspace...’ menu item.
From the command line you can change the working directory by the
function setwd: see its help page.
Yes. All ports of R use the same format for saved workspaces, so they are interchangeable (for the same 4.x.? version of R, at least).
Note though that character data in a workspace will be in a particular encoding that may not be recorded in the workspace, so workspaces containing non-ASCII character data may not be interchangeable even on the same OS. Since R marks character data when it knows it to be in UTF-8 or Latin-1 (including its Windows superset, CP1252), strings in those encodings are likely to be transferred correctly: fortunately this covers most of the common cases (macOS normally uses UTF-8, and Linux users are likely to use UTF-8 or perhaps Latin-1).
It is possible to save references to package namespaces when saving the workspace: if that happens the package will need to be installed on the machine loading the workspace.
This is deliberate: the console output is buffered and re-written in chunks to be faster and less distracting. You can turn buffering off or on from the ‘Misc’ menu or the right-click menu: Ctrl-W toggles the setting.
If you are sourcing R code or writing from a function, there is another
option. A call to the R function flush.console() will write out
the buffer and so update the console.
They only seem to be truncated: that $ at the end indicates you can scroll the window to see the rest of the line. Use the horizontal scrollbar or the CTRL + left/right arrow keys to scroll horizontally. (The left/right arrow keys work in the pager too.)
See the ‘R Installation and Administration’ manual (for the version of R you want to install).
Fast BLAS (Basic Linear Algebra Subprograms, http://www.netlib.org/blas/faq.html) routines are used to speed up numerical linear algebra. There is support in the R sources for the ‘tuned’ BLAS called ATLAS (http://math-atlas.sourceforge.net). The savings can be appreciable but because ATLAS is tuned to a particular chip we can’t use it generally. However, linear algebra on large matrices is not often an important part of R computations, and more typical calculations on small matrices may run slower.
BLAS support is supplied by the single DLL R_HOME\bin\x64\Rblas.dll, and you can add a fast BLAS just by replacing that. Replacements for 32-bit R and some of the older common chips are available on CRAN in directory bin/windows/contrib/ATLAS. See the R Installation and Administration’ manual for how to build an ATLAS Rblas.dll tuned to your system using the R sources. Unfortunately the process has been less successful when tried for the common current CPUs.
Note that fast BLAS implementations may give different (and often slightly less accurate) results than the reference BLAS included in R.
We strongly encourage you to do this via building an R package: see the ‘Writing R Extensions’ manual. In any event you should get and install the tools and toolchain mentioned in the ‘R Installation and Administration’ manual. Then you can use
...\bin\x64\R CMD SHLIB foo.c bar.f
to make foo.dll. Use ...\bin\x64\R CMD SHLIB --help for
further options, or see ?SHLIB. (Replace x64 by
i386 for 64-bit R.)
If you want to use Visual C++, Borland C++ or other compilers, see the appropriate section in README.packages.
Debugging under Windows is often a fraught process, and sometimes does
not work at all. If all you need is a just-in-time debugger to
catch crashes, consider (32-bit) Dr. Mingw from the
mingw-utils bundle on http://www.mingw.org. That will be
able to pinpoint the error, most effectively if you build a version of R
with debugging information as described below.
First, build a version of the R system with debugging information by
make clean make DEBUG=T
and make a debug version of your package by
Rcmd INSTALL --debug mypkg
You will need a suitable version of gdb which matches your
compiler. Then you can debug by
gdb /path/to/R-4.0.2/bin/x64/Rgui.exe
(or use Rterm.exe.) However, note
gdb may only be able to find the source code if we run in the
location where the source was compiled (R-4.0.2/src/gnuwin32 for
the main system, R-4.0.2/src/library/mypkg/src for a package),
unless told otherwise by the directory command. It is most
convenient to set a list of code locations via directory commands
in the file .gdbinit in the directory from which gdb is
run.
tukeyline in
package stats might be
gdb ../../../../bin/i386/Rgui.exe
(gdb) break WinMain
(gdb) run
[ stops with R.dll loaded ]
(gdb) break R_ReadConsole
(gdb) continue
[ stops with console running ]
(gdb) continue
Rconsole> library(stats)
(gdb) break tukeyline
(gdb) clear R_ReadConsole
(gdb) continue
Rconsole> example(line)
...
Alternatively, in Rgui you can use the ‘Misc|Break to
debugger’ menu item after your DLL is loaded. The C function call
breaktodebugger() will do the same thing.
gdb. It does often work with the cygwin version.
You need to do two things:
(a) Write a wrapper to export the symbols you want to call from R as
extern "C".
(b) Include the C++ libraries in the link to make the DLL. Suppose
X.cc contains your C++ code, and X_main.cc is the wrapper,
as in the example in ‘Writing R Extensions’. Then build the DLL by
(gcc)
...\bin\x64\R CMD SHLIB X.cc X_main.cc
or (VC++, which requires extension .cpp)
cl /MT /c X.cpp X_main.cpp link /dll /out:X.dll /export:X_main X.obj X_main.obj
and call the entry point(s) in X_R, such as X_main.
Construction of static variables will occur when the DLL is loaded, and
destruction when the DLL is unloaded, usually when R terminates.
Note that you will not see the messages from this example in the GUI console: see the next section.
The Rgui.exe console is a Windows application: writing to
stdout or stderr will not produce output in the
console. (This will work with Rterm.exe.) Use Rprintf or
REprintf instead. These are declared in header file
R_ext/PrtUtil.h.
Note that output from the console is delayed (see The output to the console seems to be delayed), so that you will not normally see any output before returning to the R prompt.
Writing to Fortran output writes to a file, not the Rgui console.
Use one of the subroutines dblepr, intpr or realpr
documented in the ‘Writing R Extensions’ manual.
Note that output from the console is delayed (see The output to the console seems to be delayed), so that you will not normally see any
output before returning to the R prompt even when using the xxxpr
subroutines.
The console, pagers and graphics window all run in the same thread
as the R engine. To allow the console etc to respond to Windows events,
call R_ProcessEvents() periodically from your compiled code.
If you want output to be updated on the console, call
R_FlushConsole() and then R_ProcessEvents().
R-windows@r-project.org
Non-administrator accounts will automatically be offered a default installation directory in the user area.
what Windows calls x64 for x86-64 CPUs, not the very rare ia64 Windows for Itanium CPUs.
or they may have no choice: apparently some Windows editions are tied to a specific language.
It does not have a complete understanding of Windows file paths, but can complete most relative or absolute file paths, including drives and spaces. Relative paths on drives are not handled, for example.