CRAN Package Check Results for Package DrugSim2DR

Last updated on 2025-07-27 06:49:25 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 0.1.1 13.01 108.41 121.42 OK
r-devel-linux-x86_64-debian-gcc 0.1.1 8.91 70.20 79.11 ERROR
r-devel-linux-x86_64-fedora-clang 0.1.1 186.63 NOTE
r-devel-linux-x86_64-fedora-gcc 0.1.1 187.28 NOTE
r-devel-windows-x86_64 0.1.1 17.00 112.00 129.00 OK
r-patched-linux-x86_64 0.1.1 13.80 103.23 117.03 OK
r-release-linux-x86_64 0.1.1 9.38 94.73 104.11 ERROR
r-release-macos-arm64 0.1.1 73.00 OK
r-release-macos-x86_64 0.1.1 6.00 ERROR
r-release-windows-x86_64 0.1.1 15.00 109.00 124.00 ERROR
r-oldrel-macos-arm64 0.1.1 64.00 OK
r-oldrel-macos-x86_64 0.1.1 95.00 OK
r-oldrel-windows-x86_64 0.1.1 20.00 137.00 157.00 OK

Check Details

Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: ... --- re-building ‘DrugSim2DR.Rmd’ using rmarkdown Quitting from DrugSim2DR.Rmd:107-115 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! error in evaluating the argument 'x' in selecting a method for function 'as.matrix': subscript out of bounds --- Backtrace: ▆ 1. ├─DrugSim2DR::plotDrugstructure("DB00780") 2. │ ├─sp::plot(sdfset) 3. │ └─sp::plot(sdfset) 4. │ └─ChemmineR (local) .local(x, ...) 5. │ └─ChemmineR::plotStruc(sdf = x[[i]], main = print_cid[i], ...) 6. │ ├─base::cbind(...) 7. │ ├─base::as.matrix(bonds(sdf, type = "bonds")[, -1]) 8. │ └─ChemmineR::bonds(sdf, type = "bonds") 9. │ └─ChemmineR (local) .bonds(x, type) 10. └─base (local) `<fn>`(`<sbscOOBE>`) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'DrugSim2DR.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': subscript out of bounds --- failed re-building ‘DrugSim2DR.Rmd’ SUMMARY: processing the following file failed: ‘DrugSim2DR.Rmd’ Error: Vignette re-building failed. Execution halted Flavors: r-devel-linux-x86_64-debian-gcc, r-release-linux-x86_64

Version: 0.1.1
Check: dependencies in R code
Result: NOTE Namespace in Imports field not imported from: ‘base’ All declared Imports should be used. Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc

Version: 0.1.1
Check: package dependencies
Result: ERROR Package required but not available: ‘ChemmineR’ See section ‘The DESCRIPTION file’ in the ‘Writing R Extensions’ manual. Flavor: r-release-macos-x86_64

Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR Error(s) in re-building vignettes: --- re-building 'DrugSim2DR.Rmd' using rmarkdown Quitting from DrugSim2DR.Rmd:107-115 [unnamed-chunk-7] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error: ! error in evaluating the argument 'x' in selecting a method for function 'as.matrix': subscript out of bounds --- Backtrace: ▆ 1. ├─DrugSim2DR::plotDrugstructure("DB00780") 2. │ ├─sp::plot(sdfset) 3. │ └─sp::plot(sdfset) 4. │ └─ChemmineR (local) .local(x, ...) 5. │ └─ChemmineR::plotStruc(sdf = x[[i]], main = print_cid[i], ...) 6. │ ├─base::cbind(...) 7. │ ├─base::as.matrix(bonds(sdf, type = "bonds")[, -1]) 8. │ └─ChemmineR::bonds(sdf, type = "bonds") 9. │ └─ChemmineR (local) .bonds(x, type) 10. └─base (local) `<fn>`(`<sbscOOBE>`) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'DrugSim2DR.Rmd' failed with diagnostics: error in evaluating the argument 'x' in selecting a method for function 'as.matrix': subscript out of bounds --- failed re-building 'DrugSim2DR.Rmd' SUMMARY: processing the following file failed: 'DrugSim2DR.Rmd' Error: Vignette re-building failed. Execution halted Flavor: r-release-windows-x86_64