Last updated on 2025-02-22 07:51:27 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.6.1 | 13.09 | 161.19 | 174.28 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.6.1 | 8.47 | 109.97 | 118.44 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.6.1 | OK | ||||
| r-devel-linux-x86_64-fedora-gcc | 1.6.1 | 259.54 | ERROR | |||
| r-devel-macos-arm64 | 1.6.1 | 88.00 | OK | |||
| r-devel-macos-x86_64 | 1.6.1 | 151.00 | OK | |||
| r-devel-windows-x86_64 | 1.6.1 | 14.00 | 177.00 | 191.00 | OK | |
| r-patched-linux-x86_64 | 1.6.1 | 14.31 | 148.68 | 162.99 | OK | |
| r-release-linux-x86_64 | 1.6.1 | 8.60 | 148.41 | 157.01 | OK | |
| r-release-macos-arm64 | 1.6.1 | 82.00 | NOTE | |||
| r-release-macos-x86_64 | 1.6.1 | 201.00 | NOTE | |||
| r-release-windows-x86_64 | 1.6.1 | 15.00 | 176.00 | 191.00 | NOTE | |
| r-oldrel-macos-arm64 | 1.6.1 | 87.00 | NOTE | |||
| r-oldrel-macos-x86_64 | 1.6.1 | 178.00 | NOTE | |||
| r-oldrel-windows-x86_64 | 1.6.1 | 18.00 | 215.00 | 233.00 | NOTE |
Version: 1.6.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [57s/58s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(clinDataReview)
>
> test_check("clinDataReview")
adding: report.html (deflated 63%)
adding: report_dependencies1b286d153cdf5a/ (stored 0%)
adding: report_dependencies1b286d153cdf5a/file1b286d31d59e32.html (deflated 8%)
[ FAIL 6 | WARN 0 | SKIP 31 | PASS 509 ]
══ Skipped tests (31) ══════════════════════════════════════════════════════════
• On CRAN (31): 'test_knitPrint.R:35:2', 'test_knitPrint.R:76:2',
'test_knitPrint.R:129:2', 'test_knitPrint.R:182:2', 'test_knitPrint.R:228:2',
'test_knitPrint.R:290:2', 'test_render_clinDataReviewReport.R:371:2',
'test_render_clinDataReviewReport.R:414:2',
'test_render_clinDataReviewReport.R:452:2',
'test_render_clinDataReviewReport.R:497:2',
'test_render_clinDataReviewReport.R:561:2',
'test_render_clinDataReviewReport.R:633:2',
'test_render_clinDataReviewReport.R:700:2',
'test_render_clinDataReviewReport.R:758:2',
'test_render_clinDataReviewReport.R:816:2',
'test_render_clinDataReviewReport.R:874:2',
'test_render_clinDataReviewReport.R:1048:2',
'test_render_clinDataReviewReport.R:1119:3',
'test_render_clinDataReviewReport.R:1230:2',
'test_render_clinDataReviewReport.R:1371:3',
'test_render_clinDataReviewReport.R:1489:3', 'test_skeleton.R:92:2',
'test_skeleton.R:132:3', 'test_templates.R:53:2', 'test_templates.R:100:3',
'test_templates.R:162:2', 'test_templates.R:208:2', 'test_templates.R:255:2',
'test_templates.R:306:3', 'test_templates.R:369:2', 'test_templates.R:418:2'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_annotateData.R:207:2'): Data is correctly annotated based on an exported dataset ──
Error in `tempdir(check)`: NA in coercion to Rboolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:207:9
── Error ('test_annotateData.R:237:2'): Data is correctly annotated with a specified variable based on an exported dataset ──
Error in `tempdir(check)`: NA in coercion to Rboolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:237:9
── Error ('test_annotateData.R:371:2'): Data is correctly annotated based on the preset 'demographics' option ──
Error in `tempdir(check)`: NA in coercion to Rboolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:371:9
── Error ('test_annotateData.R:456:2'): Data is correctly annotated based on the preset 'exposed_subjects' option ──
Error in `tempdir(check)`: NA in coercion to Rboolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:456:9
── Error ('test_annotateData.R:490:2'): An error is generated when annotating with the preset 'exposed_subjects' option, but this dataset does not contain a subject variable ──
Error in `tempdir(check)`: NA in coercion to Rboolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:490:9
── Error ('test_annotateData.R:515:2'): An error is generated when annotating with the preset 'exposed_subjects' option, but this dataset does not contain a start time variable ──
Error in `tempdir(check)`: NA in coercion to Rboolean
Backtrace:
▆
1. └─base::tempdir("annotation") at test_annotateData.R:515:9
[ FAIL 6 | WARN 0 | SKIP 31 | PASS 509 ]
Error: Test failures
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 1.6.1
Check: installed package size
Result: NOTE
installed size is 5.6Mb
sub-directories of 1Mb or more:
doc 4.3Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64