CRAN Package Check Results for Package data.table

Last updated on 2025-04-04 18:53:25 CEST.

Flavor Version Tinstall Tcheck Ttotal Status Flags
r-devel-linux-x86_64-debian-clang 1.17.0 37.68 286.12 323.80 ERROR
r-devel-linux-x86_64-debian-gcc 1.17.0 31.30 192.63 223.93 ERROR
r-devel-linux-x86_64-fedora-clang 1.17.0 283.63 ERROR
r-devel-linux-x86_64-fedora-gcc 1.17.0 462.70 ERROR
r-devel-macos-arm64 1.17.0 151.00 NOTE
r-devel-macos-x86_64 1.17.0 287.00 NOTE
r-devel-windows-x86_64 1.17.0 63.00 579.00 642.00 NOTE
r-patched-linux-x86_64 1.17.0 43.62 237.81 281.43 NOTE
r-release-linux-x86_64 1.17.0 38.60 233.91 272.51 OK
r-release-macos-arm64 1.17.0 178.00 NOTE
r-release-macos-x86_64 1.17.0 306.00 NOTE
r-release-windows-x86_64 1.17.0 57.00 592.00 649.00 NOTE
r-oldrel-macos-arm64 1.17.0 135.00 NOTE
r-oldrel-macos-x86_64 1.17.0 269.00 NOTE
r-oldrel-windows-x86_64 1.17.0 58.00 723.00 781.00 NOTE

Check Details

Version: 1.17.0
Check: compiled code
Result: NOTE File ‘data.table/libs/data_table.so’: Found non-API calls to R: ‘LEVELS’, ‘OBJECT’, ‘Rf_GetOption’, ‘Rf_isFrame’, ‘SETLENGTH’, ‘SET_GROWABLE_BIT’, ‘SET_TRUELENGTH’, ‘TRUELENGTH’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points. Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-macos-arm64, r-devel-macos-x86_64, r-patched-linux-x86_64

Version: 1.17.0
Check: tests
Result: ERROR Running ‘S4.R’ [1s/1s] Running ‘autoprint.R’ [0s/1s] Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK Running ‘froll.R’ [32s/29s] Running ‘knitr.R’ [1s/1s] Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK Running ‘main.R’ [117s/97s] Running ‘nafill.R’ [1s/1s] Running ‘other.R’ [0s/1s] Running ‘programming.R’ [2s/2s] Running ‘types.R’ [1s/1s] Running the tests in ‘tests/main.R’ failed. Complete output: > require(data.table) Loading required package: data.table > > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw getDTthreads(verbose=TRUE): OpenMP version (_OPENMP) 202011 omp_get_num_procs() 32 R_DATATABLE_NUM_PROCS_PERCENT unset (default 50) R_DATATABLE_NUM_THREADS unset R_DATATABLE_THROTTLE unset (default 1024) omp_get_thread_limit() 3 omp_get_max_threads() 3 OMP_THREAD_LIMIT 3 OMP_NUM_THREADS 3 RestoreAfterFork true data.table is using 3 threads with throttle==1024. See ?setDTthreads. test.data.table() running: /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/data.table/tests/tests.Rraw.bz2 Test 944.5 produced 0 warnings but expected 1 Expected: deprecated, as NULL cannot have attributes Observed: Test 944.5 produced 1 errors but expected 0 Expected: Observed: attempt to set an attribute on NULL Thu Apr 3 22:28:39 2025 endian==little, sizeof(long double)==16, longdouble.digits==64, sizeof(pointer)==8, TZ==unset, Sys.timezone()=='Europe/Vienna', Sys.getlocale()=='LC_CTYPE=C.UTF-8;LC_NUMERIC=C;LC_TIME=C.UTF-8;LC_COLLATE=C;LC_MONETARY=C.UTF-8;LC_MESSAGES=C.UTF-8;LC_PAPER=C.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=C.UTF-8;LC_IDENTIFICATION=C', l10n_info()=='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE; codeset=UTF-8', getDTthreads()=='OpenMP version (_OPENMP)==202011; omp_get_num_procs()==32; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; R_DATATABLE_THROTTLE==unset (default 1024); omp_get_thread_limit()==3; omp_get_max_threads()==3; OMP_THREAD_LIMIT==3; OMP_NUM_THREADS==3; RestoreAfterFork==true; data.table is using 3 threads with throttle==1024. See ?setDTthreads.', .libPaths()=='/home/hornik/tmp/scratch/RtmpuWviLs/RLIBS_f41d755f4628c','/home/hornik/tmp/R.check/r-devel-clang/Work/build/library', zlibVersion()==1.3.1 ZLIB_VERSION==1.3.1 Error in test.data.table() : 1 error out of 11770. Search tests/tests.Rraw.bz2 for test number 944.5. Duration: 00:01:36 elapsed (00:01:53 cpu). Calls: test.data.table -> stopf -> raise_condition -> signal Execution halted Flavor: r-devel-linux-x86_64-debian-clang

Version: 1.17.0
Check: tests
Result: ERROR Running ‘S4.R’ [0s/1s] Running ‘autoprint.R’ [0s/1s] Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK Running ‘froll.R’ [14s/16s] Running ‘knitr.R’ [0s/0s] Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK Running ‘main.R’ [81s/76s] Running ‘nafill.R’ [1s/1s] Running ‘other.R’ [0s/0s] Running ‘programming.R’ [1s/1s] Running ‘types.R’ [0s/1s] Running the tests in ‘tests/main.R’ failed. Complete output: > require(data.table) Loading required package: data.table > > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw getDTthreads(verbose=TRUE): OpenMP version (_OPENMP) 201511 omp_get_num_procs() 64 R_DATATABLE_NUM_PROCS_PERCENT unset (default 50) R_DATATABLE_NUM_THREADS unset R_DATATABLE_THROTTLE unset (default 1024) omp_get_thread_limit() 3 omp_get_max_threads() 3 OMP_THREAD_LIMIT 3 OMP_NUM_THREADS 3 RestoreAfterFork true data.table is using 3 threads with throttle==1024. See ?setDTthreads. test.data.table() running: /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/data.table/tests/tests.Rraw.bz2 Test 944.5 produced 0 warnings but expected 1 Expected: deprecated, as NULL cannot have attributes Observed: Test 944.5 produced 1 errors but expected 0 Expected: Observed: attempt to set an attribute on NULL Thu Apr 3 15:10:24 2025 endian==little, sizeof(long double)==16, longdouble.digits==64, sizeof(pointer)==8, TZ==unset, Sys.timezone()=='Europe/Vienna', Sys.getlocale()=='LC_CTYPE=C.UTF-8;LC_NUMERIC=C;LC_TIME=C.UTF-8;LC_COLLATE=C;LC_MONETARY=C.UTF-8;LC_MESSAGES=C.UTF-8;LC_PAPER=C.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=C.UTF-8;LC_IDENTIFICATION=C', l10n_info()=='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE; codeset=UTF-8', getDTthreads()=='OpenMP version (_OPENMP)==201511; omp_get_num_procs()==64; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; R_DATATABLE_THROTTLE==unset (default 1024); omp_get_thread_limit()==3; omp_get_max_threads()==3; OMP_THREAD_LIMIT==3; OMP_NUM_THREADS==3; RestoreAfterFork==true; data.table is using 3 threads with throttle==1024. See ?setDTthreads.', .libPaths()=='/tmp/RtmpgIwLkv/RLIBS_267dddbef6e98','/home/hornik/tmp/R.check/r-devel-gcc/Work/build/library', zlibVersion()==1.3.1 ZLIB_VERSION==1.3.1 Error in test.data.table() : 1 error out of 11770. Search tests/tests.Rraw.bz2 for test number 944.5. Duration: 00:01:16 elapsed (00:01:20 cpu). Calls: test.data.table -> stopf -> raise_condition -> signal Execution halted Flavor: r-devel-linux-x86_64-debian-gcc

Version: 1.17.0
Check: tests
Result: ERROR Running ‘S4.R’ Running ‘autoprint.R’ Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK Running ‘froll.R’ [28s/21s] Running ‘knitr.R’ Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK Running ‘main.R’ [81s/59s] Running ‘nafill.R’ Running ‘other.R’ Running ‘programming.R’ Running ‘types.R’ Running the tests in ‘tests/main.R’ failed. Complete output: > require(data.table) Loading required package: data.table > > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw getDTthreads(verbose=TRUE): OpenMP version (_OPENMP) 202011 omp_get_num_procs() 24 R_DATATABLE_NUM_PROCS_PERCENT unset (default 50) R_DATATABLE_NUM_THREADS unset R_DATATABLE_THROTTLE unset (default 1024) omp_get_thread_limit() 2 omp_get_max_threads() 24 OMP_THREAD_LIMIT 2 OMP_NUM_THREADS unset RestoreAfterFork true data.table is using 2 threads with throttle==1024. See ?setDTthreads. test.data.table() running: /data/gannet/ripley/R/packages/tests-clang/data.table.Rcheck/data.table/tests/tests.Rraw.bz2 Test 944.5 produced 0 warnings but expected 1 Expected: deprecated, as NULL cannot have attributes Observed: Test 944.5 produced 1 errors but expected 0 Expected: Observed: attempt to set an attribute on NULL Wed Apr 2 09:10:15 2025 endian==little, sizeof(long double)==16, longdouble.digits==64, sizeof(pointer)==8, TZ==unset, Sys.timezone()=='Europe/London', Sys.getlocale()=='LC_CTYPE=en_GB.utf8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=C;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C', l10n_info()=='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE; codeset=UTF-8', getDTthreads()=='OpenMP version (_OPENMP)==202011; omp_get_num_procs()==24; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; R_DATATABLE_THROTTLE==unset (default 1024); omp_get_thread_limit()==2; omp_get_max_threads()==24; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads with throttle==1024. See ?setDTthreads.', .libPaths()=='/tmp/RtmpkAlIpj/RLIBS_296f10496cdd23','/data/gannet/ripley/R/R-clang/library', zlibVersion()==1.3.1.zlib-ng ZLIB_VERSION==1.3.1.zlib-ng Error in test.data.table() : 1 error out of 11770. Search tests/tests.Rraw.bz2 for test number 944.5. Duration: 58.4s elapsed (00:01:17 cpu). Calls: test.data.table -> stopf -> raise_condition -> signal Execution halted Flavor: r-devel-linux-x86_64-fedora-clang

Version: 1.17.0
Check: tests
Result: ERROR Running ‘S4.R’ Running ‘autoprint.R’ Comparing ‘autoprint.Rout’ to ‘autoprint.Rout.save’ ... OK Running ‘froll.R’ [39s/47s] Running ‘knitr.R’ Comparing ‘knitr.Rout’ to ‘knitr.Rout.save’ ... OK Running ‘main.R’ [127s/151s] Running ‘nafill.R’ Running ‘other.R’ Running ‘programming.R’ Running ‘types.R’ Running the tests in ‘tests/main.R’ failed. Complete output: > require(data.table) Loading required package: data.table > > test.data.table() # runs the main test suite of 5,000+ tests in /inst/tests/tests.Rraw getDTthreads(verbose=TRUE): OpenMP version (_OPENMP) 201511 omp_get_num_procs() 24 R_DATATABLE_NUM_PROCS_PERCENT unset (default 50) R_DATATABLE_NUM_THREADS unset R_DATATABLE_THROTTLE unset (default 1024) omp_get_thread_limit() 2 omp_get_max_threads() 24 OMP_THREAD_LIMIT 2 OMP_NUM_THREADS unset RestoreAfterFork true data.table is using 2 threads with throttle==1024. See ?setDTthreads. test.data.table() running: /data/gannet/ripley/R/packages/tests-devel/data.table.Rcheck/data.table/tests/tests.Rraw.bz2 Test 944.5 produced 0 warnings but expected 1 Expected: deprecated, as NULL cannot have attributes Observed: Test 944.5 produced 1 errors but expected 0 Expected: Observed: attempt to set an attribute on NULL Fri Apr 4 10:28:07 2025 endian==little, sizeof(long double)==16, longdouble.digits==64, sizeof(pointer)==8, TZ==unset, Sys.timezone()=='Europe/London', Sys.getlocale()=='LC_CTYPE=en_GB.utf8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=C;LC_MONETARY=en_GB.UTF-8;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C', l10n_info()=='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE; codeset=UTF-8', getDTthreads()=='OpenMP version (_OPENMP)==201511; omp_get_num_procs()==24; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; R_DATATABLE_THROTTLE==unset (default 1024); omp_get_thread_limit()==2; omp_get_max_threads()==24; OMP_THREAD_LIMIT==2; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads with throttle==1024. See ?setDTthreads.', .libPaths()=='/data/gannet/ripley/R/packages/tests-devel/data.table.Rcheck','/data/gannet/ripley/R/test-dev','/data/gannet/ripley/R/test-BioCdata','/data/gannet/ripley/R/R-devel/library', zlibVersion()==1.3.1.zlib-ng ZLIB_VERSION==1.3.1.zlib-ng Error in test.data.table() : 1 error out of 11770. Search tests/tests.Rraw.bz2 for test number 944.5. Duration: 00:02:30 elapsed (00:02:04 cpu). Calls: test.data.table -> stopf -> raise_condition -> signal Execution halted Flavor: r-devel-linux-x86_64-fedora-gcc

Version: 1.17.0
Check: compiled code
Result: NOTE File 'data.table/libs/x64/data_table.dll': Found non-API calls to R: 'LEVELS', 'OBJECT', 'Rf_GetOption', 'Rf_isFrame', 'SETLENGTH', 'SET_GROWABLE_BIT', 'SET_TRUELENGTH', 'TRUELENGTH' Compiled code should not call non-API entry points in R. See 'Writing portable packages' in the 'Writing R Extensions' manual, and section 'Moving into C API compliance' for issues with the use of non-API entry points. Flavor: r-devel-windows-x86_64

Version: 1.17.0
Check: installed package size
Result: NOTE installed size is 6.4Mb sub-directories of 1Mb or more: libs 1.8Mb po 1.5Mb Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-release-windows-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64, r-oldrel-windows-x86_64