Last updated on 2025-10-23 18:50:28 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.1.4 | 12.24 | 241.36 | 253.60 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.1.4 | 10.17 | 245.01 | 255.18 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.1.4 | 46.00 | 272.39 | 318.39 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.1.4 | 32.00 | 320.87 | 352.87 | OK | |
| r-devel-windows-x86_64 | 1.1.4 | 20.00 | 187.00 | 207.00 | OK | |
| r-patched-linux-x86_64 | 1.1.4 | 15.00 | 274.06 | 289.06 | OK | |
| r-release-linux-x86_64 | 1.1.4 | 15.69 | 272.97 | 288.66 | OK | |
| r-release-macos-arm64 | 1.1.4 | 6.00 | 96.00 | 102.00 | OK | |
| r-release-macos-x86_64 | 1.1.4 | 15.00 | 251.00 | 266.00 | ERROR | |
| r-release-windows-x86_64 | 1.1.4 | 21.00 | 189.00 | 210.00 | OK | |
| r-oldrel-macos-arm64 | 1.1.4 | 6.00 | 92.00 | 98.00 | OK | |
| r-oldrel-macos-x86_64 | 1.1.4 | 18.00 | 298.00 | 316.00 | ERROR | |
| r-oldrel-windows-x86_64 | 1.1.4 | 25.00 | 239.00 | 264.00 | OK |
Version: 1.1.4
Check: HTML version of manual
Result: NOTE
Found the following HTML validation problems:
mapi.html:317:1 (mapi.Rd:174): Warning: missing </ul> before </div>
Flavor: r-devel-linux-x86_64-debian-clang
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [86s/179s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.706, system: 0.109, elapsed: 3.837 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.375, system: 0.416, elapsed: 18.265 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.190, system: 0.027, elapsed: 0.390 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.982, system: 0.358, elapsed: 8.479 seconds]
Computing values for grid cells...
... done. [user: 0.160, system: 0.007, elapsed: 0.313 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.034, system: 1.182, elapsed: 33.210 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.480, system: 0.060, elapsed: 3.137 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.269, system: 0.310, elapsed: 18.148 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.027, elapsed: 0.558 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.903, system: 0.311, elapsed: 9.158 seconds]
Computing values for grid cells...
... done. [user: 0.165, system: 0.006, elapsed: 0.290 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.588, system: 0.885, elapsed: 33.058 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.676, system: 0.089, elapsed: 3.907 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.069, system: 0.193, elapsed: 19.348 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.187, system: 0.027, elapsed: 0.435 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.094, system: 0.403, elapsed: 10.351 seconds]
Computing values for grid cells...
... done. [user: 0.180, system: 0.012, elapsed: 0.415 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 3 4
... computing probabilities from permuted values ...
... done. [user: 1.215, system: 0.310, elapsed: 1.618 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 17.093, system: 1.103, elapsed: 37.608 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.507, system: 0.052, elapsed: 2.461 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.056, system: 0.200, elapsed: 15.564 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.196, system: 0.030, elapsed: 0.408 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 4.200, system: 0.456, elapsed: 8.849 seconds]
Computing values for grid cells...
... done. [user: 0.187, system: 0.015, elapsed: 0.353 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.748, system: 1.069, elapsed: 33.017 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.614, system: 1.907, elapsed: 61.984 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-release-macos-x86_64
Version: 1.1.4
Check: tests
Result: ERROR
Running ‘testthat.R’ [84s/203s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(mapi)
>
> test_check("mapi")
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Estimated halfwidth: 286.835888
Estimated halfwidth: 143.417944
Linking to GEOS 3.13.0, GDAL 3.8.5, PROJ 9.5.1; sf_use_s2() is TRUE
Building local cartesian grid...
... 1071 cells
Building worldwide lat/lon grid...
Resolution: 5, Area (km^2): 209903.548034604, Spacing (km): 452.492014449456, CLS (km): 517.004996903084
... 2432 cells
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.656, system: 0.076, elapsed: 3.553 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.074, system: 0.150, elapsed: 19.700 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.023, elapsed: 0.496 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.799, system: 0.368, elapsed: 10.147 seconds]
Computing values for grid cells...
... done. [user: 0.175, system: 0.010, elapsed: 0.397 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.483, system: 0.676, elapsed: 35.613 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.709, system: 0.079, elapsed: 4.426 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.083, system: 0.163, elapsed: 18.919 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.185, system: 0.025, elapsed: 0.544 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.926, system: 0.323, elapsed: 10.559 seconds]
Computing values for grid cells...
... done. [user: 0.177, system: 0.011, elapsed: 0.485 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 15.656, system: 0.720, elapsed: 36.356 seconds]
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.728, system: 0.094, elapsed: 4.409 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.290, system: 0.294, elapsed: 20.468 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.195, system: 0.031, elapsed: 0.814 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.681, system: 0.299, elapsed: 13.958 seconds]
Computing values for grid cells...
... done. [user: 0.173, system: 0.019, elapsed: 0.703 seconds]
Starting 4 permutations...
... parallelized over 2 cores ...
1 2 4 3
... computing probabilities from permuted values ...
... done. [user: 1.091, system: 0.321, elapsed: 2.808 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 16.857, system: 1.252, elapsed: 45.562 seconds]
Building local cartesian grid...
... 1071 cells
MAPI COMPUTATION STARTED
Checking data...
`metric` provided as a vector
Unique names ... OK
All samples used in metric ... OK
... 200 samples and 39800 metric left.
Building 20100 elliptical polygons...
... 20100 ellipses. [user: 1.546, system: 0.054, elapsed: 5.545 seconds]
Computing spatial intersection between 1071 grid cells and 20100 ellipses...
... done. [user: 9.200, system: 0.250, elapsed: 30.579 seconds]
Building sample pairs...
... 39800 sample pairs. [user: 0.189, system: 0.032, elapsed: 0.340 seconds]
Matching grid cells with sample pairs...
... 2295394 matches found. [user: 3.659, system: 0.292, elapsed: 7.385 seconds]
Computing values for grid cells...
... done. [user: 0.174, system: 0.007, elapsed: 0.340 seconds]
Starting 50 permutations...
... serially ...
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... computing probabilities from permuted values ...
... done. [user: 10.624, system: 1.017, elapsed: 26.770 seconds]
MAPI COMPUTATION ENDED. [TOTAL: user: 26.124, system: 1.948, elapsed: 73.427 seconds]
Significant areas aggregation, with percentile filter minQ > 0.000000 and alpha = 0.050000 ...
... 1 upper-tail and 3 lower-tail significant areas returned
Building local cartesian grid...
... 1045 cells
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-MAPI_Varicell.R:15:5'): MAPI_Varicell ────────────────────────
sd(sf::st_area(grid.var)) (`actual`) not equal to 963339.563502512 (`expected`).
`actual`: 963429.6
`expected`: 963339.6
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 19 ]
Error: Test failures
Execution halted
Flavor: r-oldrel-macos-x86_64