Last updated on 2025-02-22 07:51:43 CET.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.2.7.8 | 14.59 | 118.20 | 132.79 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.2.7.8 | 10.09 | 81.64 | 91.73 | OK | |
| r-devel-linux-x86_64-fedora-clang | 1.2.7.8 | 172.23 | ERROR | |||
| r-devel-linux-x86_64-fedora-gcc | 1.2.7.8 | 175.19 | ERROR | |||
| r-devel-macos-arm64 | 1.2.7.8 | 92.00 | OK | |||
| r-devel-macos-x86_64 | 1.2.7.8 | 226.00 | OK | |||
| r-devel-windows-x86_64 | 1.2.7.8 | 18.00 | 180.00 | 198.00 | OK | |
| r-patched-linux-x86_64 | 1.2.7.8 | 13.40 | 105.78 | 119.18 | OK | |
| r-release-linux-x86_64 | 1.2.7.8 | 11.52 | 105.65 | 117.17 | OK | |
| r-release-macos-arm64 | 1.2.7.8 | 96.00 | OK | |||
| r-release-macos-x86_64 | 1.2.7.8 | 218.00 | OK | |||
| r-release-windows-x86_64 | 1.2.7.8 | 16.00 | 179.00 | 195.00 | OK | |
| r-oldrel-macos-arm64 | 1.2.7.8 | 99.00 | OK | |||
| r-oldrel-macos-x86_64 | 1.2.7.8 | 208.00 | OK | |||
| r-oldrel-windows-x86_64 | 1.2.7.8 | 20.00 | 228.00 | 248.00 | OK |
Version: 1.2.7.8
Check: examples
Result: ERROR
Running examples in ‘qMRI-Ex.R’ failed
The error most likely occurred in:
> ### Name: estimateIRfluid
> ### Title: Estimate parameters in Inversion Recovery MRI experiments model
> ### for CSF voxel
> ### Aliases: estimateIRfluid
> ### Keywords: models regression
>
> ### ** Examples
>
> dataDir0 <- system.file("extdataIR", package = "qMRI")
> dataDir <- tempdir("IRdata")
Error in tempdir(check) : NA in coercion to Rboolean
Execution halted
Flavors: r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc
Version: 1.2.7.8
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘IRMRI-Example.Rnw’ using Sweave
Error: processing vignette 'IRMRI-Example.Rnw' failed with diagnostics:
chunk 2 (label = 0b)
Error in tempdir(check) : NA in coercion to Rboolean
--- failed re-building ‘IRMRI-Example.Rnw’
--- re-building ‘qMRI-Example.Rnw’ using Sweave
Loading required package: awsMethods
Use the function setCores() to change the number of CPU cores.
Loading required package: parallel
Reading RAW images requires to install dcraw, see
http://cybercom.net/~dcoffin/dcraw/ for LINUX and http://www.insflug.org/raw/
for macOS and Windows
Use awsMethods::setCores(ncores) to specify number of cores for openMP
oro.nifti 0.11.4
--- finished re-building ‘qMRI-Example.Rnw’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-clang/qMRI.Rcheck/vign_test/qMRI/vignettes'
pdflatex -interaction nonstopmode IRMRI-Example.tex
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024) (preloaded format=pdflatex)
restricted \write18 enabled.
entering extended mode
(./IRMRI-Example.tex
LaTeX2e <2024-11-01> patch level 2
L3 programming layer <2025-01-18>
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Document Class: article 2024/06/29 v1.4n Standard LaTeX document class
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Package filecontents Warning: This package is obsolete. Disabling it and
(filecontents) passing control to the filecontents environment
(filecontents) defined by the LaTeX kernel.
)
LaTeX Info: Writing file `./qmriIR.bib'.
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Package biblatex Warning: Using fall-back bibtex backend:
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) (/data/gannet2/ripley/2024/texmf-dist/tex/latex/biblatex/biblatex.def)
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(/data/gannet2/ripley/2024/texmf-dist/tex/latex/l3packages/xparse/xparse.sty)))
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No file IRMRI-Example.aux.
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No file IRMRI-Example.bbl.
(/data/gannet2/ripley/2024/texmf-dist/tex/context/base/mkii/supp-pdf.mkii
[Loading MPS to PDF converter (version 2006.09.02).]
)
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! LaTeX Error: File `IRMRI-Example-concordance.tex' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: tex)
Enter file name:
! Emergency stop.
<read *>
l.54 \input{IRMRI-Example-concordance}
^^M
! ==> Fatal error occurred, no output PDF file produced!
Transcript written on IRMRI-Example.log.
make[1]: *** [Makefile:3: all] Error 1
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-clang/qMRI.Rcheck/vign_test/qMRI/vignettes'
Error in tools::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-clang/qMRI.Rcheck/vign_test/qMRI", :
running 'make' failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 1.2.7.8
Check: re-building of vignette outputs
Result: WARN
Error(s) in re-building vignettes:
--- re-building ‘IRMRI-Example.Rnw’ using Sweave
Error: processing vignette 'IRMRI-Example.Rnw' failed with diagnostics:
chunk 2 (label = 0b)
Error in tempdir(check) : NA in coercion to Rboolean
--- failed re-building ‘IRMRI-Example.Rnw’
--- re-building ‘qMRI-Example.Rnw’ using Sweave
Loading required package: awsMethods
Use the function setCores() to change the number of CPU cores.
Loading required package: parallel
Reading RAW images requires to install dcraw, see
http://cybercom.net/~dcoffin/dcraw/ for LINUX and http://www.insflug.org/raw/
for macOS and Windows
Use awsMethods::setCores(ncores) to specify number of cores for openMP
oro.nifti 0.11.4
--- finished re-building ‘qMRI-Example.Rnw’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/qMRI.Rcheck/vign_test/qMRI/vignettes'
pdflatex -interaction nonstopmode IRMRI-Example.tex
This is pdfTeX, Version 3.141592653-2.6-1.40.26 (TeX Live 2024) (preloaded format=pdflatex)
restricted \write18 enabled.
entering extended mode
(./IRMRI-Example.tex
LaTeX2e <2024-11-01> patch level 2
L3 programming layer <2025-01-18>
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/base/article.cls
Document Class: article 2024/06/29 v1.4n Standard LaTeX document class
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/base/size10.clo))
(/data/gannet2/ripley/2024/texmf-dist/tex/latex/filecontents/filecontents.sty
Package filecontents Warning: This package is obsolete. Disabling it and
(filecontents) passing control to the filecontents environment
(filecontents) defined by the LaTeX kernel.
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LaTeX Info: Writing file `./qmriIR.bib'.
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! LaTeX Error: File `IRMRI-Example-concordance.tex' not found.
Type X to quit or <RETURN> to proceed,
or enter new name. (Default extension: tex)
Enter file name:
! Emergency stop.
<read *>
l.54 \input{IRMRI-Example-concordance}
^^M
! ==> Fatal error occurred, no output PDF file produced!
Transcript written on IRMRI-Example.log.
make[1]: *** [Makefile:3: all] Error 1
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/qMRI.Rcheck/vign_test/qMRI/vignettes'
Error in tools::buildVignettes(dir = "/data/gannet/ripley/R/packages/tests-devel/qMRI.Rcheck/vign_test/qMRI", :
running 'make' failed
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc