denim: Generate and Simulate Deterministic Compartmental Models

R package to build and simulate deterministic compartmental models that can be non-Markovian. Length of stay in each compartment can be defined to follow a parametric distribution (d_exponential(), d_gamma(), d_weibull(), d_lognormal()) or a non-parametric distribution (nonparametric()). Other supported types of transition from one compartment to another includes fixed transition (constant()), multinomial (multinomial()), fixed transition probability (transprob()).

Version:	1.2.2
Depends:	R (≥ 4.1.0)
Imports:	Rcpp (≥ 1.0.6), colorspace, rlang, glue
LinkingTo:	Rcpp, testthat
Suggests:	covr, knitr, rmarkdown, testthat (≥ 3.0.0), waldo, xml2, deSolve, tidyverse, DiagrammeR
Published:	2025-08-21
DOI:	10.32614/CRAN.package.denim
Author:	Thinh Ong [aut, cph], Anh Phan [aut, cre], Marc Choisy [aut], Niels Lohman [ctb], Bjoern Hoehrmann [ctb], Florian Loitsch [ctb], Ingo Berg [ctb]
Maintainer:	Anh Phan <anhptq at oucru.org>
BugReports:	https://github.com/thinhong/denim/issues
License:	MIT + file LICENSE
URL:	https://drthinhong.com/denim/, https://github.com/thinhong/denim
NeedsCompilation:	yes
Materials:	README, NEWS
CRAN checks:	denim results

Documentation:

Reference manual:	denim.html , denim.pdf
Vignettes:	deSolve to denim (source, R code) denim: deterministic model with memory (source, R code) denim DSL (source, R code) transition to multiple states (source, R code) nonparametric distribution (source, R code)

Downloads:

Package source:	denim_1.2.2.tar.gz
Windows binaries:	r-devel: denim_1.2.2.zip, r-release: denim_1.2.2.zip, r-oldrel: denim_1.2.2.zip
macOS binaries:	r-release (arm64): denim_1.2.2.tgz, r-oldrel (arm64): denim_1.2.2.tgz, r-release (x86_64): denim_1.2.2.tgz, r-oldrel (x86_64): denim_1.2.2.tgz
Old sources:	denim archive

Linking:

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