eHDPrep (development version)
eHDPrep 1.3.3
- Fixed typo in vignette
- Added CITATION file and added reference to citation in vignette
eHDPrep 1.3.2
General
- Added a
NEWS.md
file to track changes to the
package.
- Added link to eHDPrep’s github repository in
package documentation.
- Updated various documentation (functions and vignette).
- Now minimally requires and is compatible with dplyr 1.1.0 (#3, @DavisVaughan).
Quality Control
completeness_heatmap()
has been altered to avoid an
issue of plotting over other plots. Now requires plot.new() call.
Semantic Enrichment
- Added function,
metavariable_variable_descendants()
, to
more easily access relationships between meta-variables and their
descendant variables.
semantic_enrichment()
now accepts a label attribute to
label meta-variables with the parameter: label_attr
.
semantic_enrichment()
now accepts an ontology as a data
frame edge table, as a path to an edge table in CSV format, or as a
tidygraph
/igraph
graph.
- Added function,
edge_tbl_to_graph()
, to convert edge
tables, as data frames, to tidygraph
graphs.
- Added data,
example_edge_table
, to demonstrate
edge_tbl_to_graph()
.
example_ontology
is now generated from
example_edge_table
.
metavariable_info()
now can exclude meta-variables with
an information content less than a threshold from output with the
IC_threshold
parameter. This will exclude non-specific
meta-variables from consideration when output is passed to
metavariable_agg()
(e.g. ontology’s root node).