readyomics: Ready-to-Use Omics Formatting, Analysis, and Visualization
Pipeline
Provides a flexible and streamlined pipeline for formatting, analyzing, and
visualizing omics data, regardless of omics type (e.g. transcriptomics, proteomics,
metabolomics). The package includes tools for shaping input data into analysis-ready
structures, fitting linear or mixed-effect models, extracting key contrasts, and
generating a rich variety of ready-to-use publication-quality plots.
Designed for transparency and reproducibility across a wide range of study designs,
with customizable components for statistical modeling.
Version: |
0.1.0 |
Depends: |
R (≥ 4.1.0) |
Imports: |
dplyr, future, future.apply, ggplot2, lme4, lmerTest, methods, permute, rlang, stats, stringr, tidyr, utils, vegan, zCompositions |
Suggests: |
ape, data.table, ggrepel, ggridges, IHW, imputeLCMD, knitr, phyloseq, progressr, purrr, qvalue, rmarkdown, ropls, scales, testthat (≥ 3.0.0) |
Published: |
2025-08-20 |
DOI: |
10.32614/CRAN.package.readyomics |
Author: |
Laura Martinez-Gili [cre, aut, cph] |
Maintainer: |
Laura Martinez-Gili <martinez.gili.laura at gmail.com> |
BugReports: |
https://github.com/lmartinezgili/readyomics/issues |
License: |
MIT + file LICENSE |
URL: |
https://lmartinezgili.github.io/readyomics/,
https://github.com/lmartinezgili/readyomics |
NeedsCompilation: |
no |
Materials: |
README, NEWS |
CRAN checks: |
readyomics results |
Documentation:
Downloads:
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