Last updated on 2026-05-28 14:53:16 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-fedora-clang | 0.1.1 | 66.00 | 536.64 | 602.64 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.1 | 61.00 | 521.68 | 582.68 | OK | |
| r-release-macos-arm64 | 0.1.1 | 8.00 | 73.00 | 81.00 | OK | |
| r-release-macos-x86_64 | 0.1.1 | 24.00 | 385.00 | 409.00 | OK | |
| r-release-windows-x86_64 | 0.1.1 | 33.00 | 285.00 | 318.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.1 | 7.00 | 80.00 | 87.00 | OK | |
| r-oldrel-macos-x86_64 | 0.1.1 | 23.00 | 413.00 | 436.00 | OK | |
| r-oldrel-windows-x86_64 | 0.1.1 | 48.00 | 365.00 | 413.00 | OK |
Version: 0.1.1
Check: tests
Result: ERROR
Running ‘testthat.R’ [30s/114s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(dbSpatial)
>
> test_check("dbSpatial")
Saving _problems/test-extract-15.R
Saving _problems/test-spatial-functions-15.R
Saving _problems/test-spatial-functions-35.R
Saving _problems/test-spatial-functions-70.R
[gannet:4089740:0:4089740] Caught signal 11 (Segmentation fault: address not mapped to object at address 0x14)
==== backtrace (tid:4089740) ====
0 /lib64/libucs.so.0(ucs_handle_error+0x2e4) [0x7fb539f9bdf4]
1 /lib64/libucs.so.0(+0x17aed) [0x7fb539f9daed]
2 /lib64/libucs.so.0(+0x17cbd) [0x7fb539f9dcbd]
3 /lib64/libc.so.6(+0x1a040) [0x7fb54f328040]
4 /tmp/Rtmpnjg4qm/working_dir/Rtmp9plcq6/file3e678c34316b0/R/duckdb/extensions/v1.5.2/linux_amd64/spatial.duckdb_extension(+0x1181e00) [0x7fb420f53e00]
5 /tmp/Rtmpnjg4qm/working_dir/Rtmp9plcq6/file3e678c34316b0/R/duckdb/extensions/v1.5.2/linux_amd64/spatial.duckdb_extension(+0x1152a28) [0x7fb420f24a28]
6 /tmp/Rtmpnjg4qm/working_dir/Rtmp9plcq6/file3e678c34316b0/R/duckdb/extensions/v1.5.2/linux_amd64/spatial.duckdb_extension(+0x75c104) [0x7fb42052e104]
7 /tmp/Rtmpnjg4qm/working_dir/Rtmp9plcq6/file3e678c34316b0/R/duckdb/extensions/v1.5.2/linux_amd64/spatial.duckdb_extension(+0x75a499) [0x7fb42052c499]
8 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb15ExtensionHelper29LoadExternalExtensionInternalERNS_16DatabaseInstanceERNS_10FileSystemERKNSt3__112basic_stringIcNS5_11char_traitsIcEENS5_9allocatorIcEEEERNS_19ExtensionActiveLoadE+0x18f) [0x7fb470e79e3f]
9 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb15ExtensionHelper21LoadExternalExtensionERNS_16DatabaseInstanceERNS_10FileSystemERKNSt3__112basic_stringIcNS5_11char_traitsIcEENS5_9allocatorIcEEEE+0x4a) [0x7fb470e79bea]
10 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZNK6duckdb12PhysicalLoad15GetDataInternalERNS_16ExecutionContextERNS_9DataChunkERNS_19OperatorSourceInputE+0x151) [0x7fb471c5e831]
11 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb16PipelineExecutor15FetchFromSourceERNS_9DataChunkE+0x9b) [0x7fb47248d8eb]
12 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb16PipelineExecutor7ExecuteEm+0x146) [0x7fb47248a4c6]
13 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb12PipelineTask11ExecuteTaskENS_17TaskExecutionModeE+0x112) [0x7fb47248a0f2]
14 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb12ExecutorTask7ExecuteENS_17TaskExecutionModeE+0xa0) [0x7fb472483d90]
15 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb8Executor11ExecuteTaskEb+0x1c0) [0x7fb4724890f0]
16 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb13ClientContext19ExecuteTaskInternalERNS_17ClientContextLockERNS_15BaseQueryResultEb+0x40) [0x7fb4722981f0]
17 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb18PendingQueryResult15ExecuteInternalERNS_17ClientContextLockE+0x7a) [0x7fb47229a97a]
18 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb13ClientContext7ExecuteERKNSt3__112basic_stringIcNS1_11char_traitsIcEENS1_9allocatorIcEEEERNS_10shared_ptrINS_21PreparedStatementDataELb1EEERKNS_22PendingQueryParametersE+0xa0) [0x7fb47229a6c0]
19 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb17PreparedStatement7ExecuteERNSt3__113unordered_mapINS1_12basic_stringIcNS1_11char_traitsIcEENS1_9allocatorIcEEEENS_18BoundParameterDataENS_33CaseInsensitiveStringHashFunctionENS_29CaseInsensitiveStringEqualityENS6_INS1_4pairIKS8_S9_EEEEEEb+0x1c3) [0x7fb4722bd473]
20 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_ZN6duckdb17PreparedStatement7ExecuteERNS_6vectorINS_5ValueELb1ENSt3__19allocatorIS2_EEEEb+0x172) [0x7fb4722bd712]
21 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_Z12rapi_executeN5cpp1116external_pointerIN6duckdb10RStatementEXadL_ZNS_15default_deleterIS2_EEvPT_EEEENS1_11ConvertOptsE+0x115) [0x7fb470b07f75]
22 /data/gannet/ripley/R/test-clang/duckdb/libs/duckdb.so(_duckdb_rapi_execute+0x66) [0x7fb470b704a6]
23 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8f4d4) [0x55fd208884d4]
24 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdadb8) [0x55fd208d3db8]
25 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc913c) [0x55fd208c213c]
26 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55fd208c18f5]
27 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc9394) [0x55fd208c2394]
28 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x26e) [0x55fd208c19be]
29 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc9394) [0x55fd208c2394]
30 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdcec0) [0x55fd208d5ec0]
31 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcd579) [0x55fd208c6579]
32 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc913c) [0x55fd208c213c]
33 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55fd208c18f5]
34 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0a59) [0x55fd208d9a59]
35 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdff4b) [0x55fd208d8f4b]
36 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc9817) [0x55fd208c2817]
37 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f8) [0x55fd208c1d48]
38 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc9394) [0x55fd208c2394]
39 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdcec0) [0x55fd208d5ec0]
40 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcd579) [0x55fd208c6579]
41 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc913c) [0x55fd208c213c]
42 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55fd208c18f5]
43 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0a59) [0x55fd208d9a59]
44 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdff4b) [0x55fd208d8f4b]
45 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc9817) [0x55fd208c2817]
46 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f8) [0x55fd208c1d48]
47 /data/gannet/ripley/R/test-clang/rlang/libs/rlang.so(+0x4983) [0x7fb54f985983]
48 /data/gannet/ripley/R/R-clang/bin/exec/R(+0x8d623) [0x55fd20886623]
49 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xcfb74) [0x55fd208c8b74]
50 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc913c) [0x55fd208c213c]
51 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x1a5) [0x55fd208c18f5]
52 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0a59) [0x55fd208d9a59]
53 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdff4b) [0x55fd208d8f4b]
54 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xc9817) [0x55fd208c2817]
55 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x5f8) [0x55fd208c1d48]
56 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe5db8) [0x55fd208dedb8]
57 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55fd208c1b20]
58 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe50ab) [0x55fd208de0ab]
59 /data/gannet/ripley/R/R-clang/bin/exec/R(Rf_eval+0x3d0) [0x55fd208c1b20]
60 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xe0a59) [0x55fd208d9a59]
61 /data/gannet/ripley/R/R-clang/bin/exec/R(+0xdff4b) [0x55fd208d8f4b]
=================================
*** caught segfault ***
address 0x4d2003e678c, cause 'unknown'
Traceback:
1: rapi_execute(stmt, convert_opts)
2: withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }})
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(withCallingHandlers(expr, condition = function(cnd) { { .__handler_frame__. <- TRUE .__setup_frame__. <- frame if (inherits(cnd, "message")) { except <- c("warning", "error") } else if (inherits(cnd, "warning")) { except <- "error" } else { except <- "" } } while (!is_null(cnd)) { if (inherits(cnd, "error")) { out <- handlers[[1L]](cnd) if (!inherits(out, "rlang_zap")) throw(out) } inherit <- .subset2(.subset2(cnd, "rlang"), "inherit") if (is_false(inherit)) { return() } cnd <- .subset2(cnd, "parent") }}), stackOverflowError = handlers[[1L]])
7: rlang::try_fetch(rapi_execute(stmt, convert_opts), error = function(e) { rethrow_error_from_rapi(e, call)})
8: rethrow_rapi_execute(res@stmt_lst$ref, duckdb_convert_opts_impl(res@connection@convert_opts, arrow = res@arrow))
9: duckdb_execute(res)
10: duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
11: .local(conn, statement, ...)
12: dbSendQuery(conn, statement, ...)
13: dbSendQuery(conn, statement, ...)
14: dbSendStatement(conn, statement, ...)
15: dbSendStatement(conn, statement, ...)
16: DBI::dbExecute(conn, query)
17: DBI::dbExecute(conn, query)
18: loadSpatial(conn = conn)
19: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage"))
20: suppressMessages(loadSpatial(conn = conn))
21: dbSpatial(conn = con, name = "test_pts", value = df, x_colName = "x", y_colName = "y", overwrite = TRUE)
22: eval(code, test_env)
23: eval(code, test_env)
24: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
25: doTryCatch(return(expr), name, parentenv, handler)
26: tryCatchOne(expr, names, parentenv, handlers[[1L]])
27: tryCatchList(expr, classes, parentenv, handlers)
28: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
29: doWithOneRestart(return(expr), restart)
30: withOneRestart(expr, restarts[[1L]])
31: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
32: test_code(code, parent.frame())
33: test_that("st_join works with different predicates", { skip_if_not_installed("duckdb") con <- DBI::dbConnect(duckdb::duckdb()) on.exit(DBI::dbDisconnect(con, shutdown = TRUE)) df <- data.frame(id = 1:3, x = c(0, 10, 20), y = c(0, 10, 20)) pts <- dbSpatial(conn = con, name = "test_pts", value = df, x_colName = "x", y_colName = "y", overwrite = TRUE) res <- st_join(pts, pts, join = sf::st_intersects) expect_s4_class(res, "dbSpatial") expect_equal(nrow(dplyr::collect(res[])), 3)})
34: eval(code, test_env)
35: eval(code, test_env)
36: withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt)
37: doTryCatch(return(expr), name, parentenv, handler)
38: tryCatchOne(expr, names, parentenv, handlers[[1L]])
39: tryCatchList(expr, classes, parentenv, handlers)
40: tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal)
41: doWithOneRestart(return(expr), restart)
42: withOneRestart(expr, restarts[[1L]])
43: withRestarts(tryCatch(withCallingHandlers({ eval(code, test_env) new_expectations <- the$test_expectations > starting_expectations if (snapshot_skipped) { skip("On CRAN") } else if (!new_expectations && skip_on_empty) { skip_empty() }}, expectation = handle_expectation, packageNotFoundError = function(e) { if (on_cran()) { skip(paste0("{", e$package, "} is not installed.")) }}, snapshot_on_cran = function(cnd) { snapshot_skipped <<- TRUE invokeRestart("muffle_cran_snapshot")}, skip = handle_skip, warning = handle_warning, message = handle_message, error = handle_error, interrupt = handle_interrupt), error = handle_fatal), end_test = function() { })
44: test_code(code = exprs, env = env, reporter = get_reporter() %||% StopReporter$new())
45: source_file(path, env = env(env), desc = desc, shuffle = shuffle, error_call = error_call)
46: FUN(X[[i]], ...)
47: lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call)
48: doTryCatch(return(expr), name, parentenv, handler)
49: tryCatchOne(expr, names, parentenv, handlers[[1L]])
50: tryCatchList(expr, classes, parentenv, handlers)
51: tryCatch(code, testthat_abort_reporter = function(cnd) { cat(conditionMessage(cnd), "\n") NULL})
52: with_reporter(reporters$multi, lapply(test_paths, test_one_file, env = env, desc = desc, shuffle = shuffle, error_call = error_call))
53: test_files_serial(test_dir = test_dir, test_package = test_package, test_paths = test_paths, load_helpers = load_helpers, reporter = reporter, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, desc = desc, load_package = load_package, shuffle = shuffle, error_call = error_call)
54: test_files(test_dir = path, test_paths = test_paths, test_package = package, reporter = reporter, load_helpers = load_helpers, env = env, stop_on_failure = stop_on_failure, stop_on_warning = stop_on_warning, load_package = load_package, parallel = parallel, shuffle = shuffle)
55: test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
56: test_check("dbSpatial")
An irrecoverable exception occurred. R is aborting now ...
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.1.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘class_structure.Rmd’ using rmarkdown
Quitting from class_structure.Rmd:32-52 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `duckdb_result()`:
! Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/tmp/Rtmpnjg4qm/working_dir/RtmpPNI4YT/file3e94af9ab1017/R/duckdb/extensions/v1.5.2/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager"
ℹ Context: rapi_execute
ℹ Error type: INVALID
---
Backtrace:
▆
1. └─dbSpatial::dbSpatial(...)
2. ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ └─base::withCallingHandlers(...)
4. └─dbSpatial::loadSpatial(conn = conn)
5. ├─DBI::dbExecute(conn, query)
6. └─DBI::dbExecute(conn, query)
7. ├─DBI::dbSendStatement(conn, statement, ...)
8. └─DBI::dbSendStatement(conn, statement, ...)
9. ├─DBI::dbSendQuery(conn, statement, ...)
10. └─duckdb::dbSendQuery(conn, statement, ...)
11. └─duckdb (local) .local(conn, statement, ...)
12. └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'class_structure.Rmd' failed with diagnostics:
Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/tmp/Rtmpnjg4qm/working_dir/RtmpPNI4YT/file3e94af9ab1017/R/duckdb/extensions/v1.5.2/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager"
ℹ Context: rapi_execute
ℹ Error type: INVALID
--- failed re-building ‘class_structure.Rmd’
--- re-building ‘getting_started.Rmd’ using rmarkdown
Quitting from getting_started.Rmd:40-53 [unnamed-chunk-3]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `duckdb_result()`:
! Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/tmp/Rtmpnjg4qm/working_dir/RtmpUs16cZ/file3eaba42fa22518/R/duckdb/extensions/v1.5.2/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager"
ℹ Context: rapi_execute
ℹ Error type: INVALID
---
Backtrace:
▆
1. └─dbSpatial::dbSpatial(...)
2. ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ └─base::withCallingHandlers(...)
4. └─dbSpatial::loadSpatial(conn = conn)
5. ├─DBI::dbExecute(conn, query)
6. └─DBI::dbExecute(conn, query)
7. ├─DBI::dbSendStatement(conn, statement, ...)
8. └─DBI::dbSendStatement(conn, statement, ...)
9. ├─DBI::dbSendQuery(conn, statement, ...)
10. └─duckdb::dbSendQuery(conn, statement, ...)
11. └─duckdb (local) .local(conn, statement, ...)
12. └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'getting_started.Rmd' failed with diagnostics:
Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/tmp/Rtmpnjg4qm/working_dir/RtmpUs16cZ/file3eaba42fa22518/R/duckdb/extensions/v1.5.2/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager"
ℹ Context: rapi_execute
ℹ Error type: INVALID
--- failed re-building ‘getting_started.Rmd’
--- re-building ‘spatial_operations.Rmd’ using rmarkdown
Quitting from spatial_operations.Rmd:24-35 [unnamed-chunk-2]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `duckdb_result()`:
! Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/tmp/Rtmpnjg4qm/working_dir/RtmppyRZOK/file3ec4b51086fba2/R/duckdb/extensions/v1.5.2/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager"
ℹ Context: rapi_execute
ℹ Error type: INVALID
---
Backtrace:
▆
1. └─dbSpatial::dbSpatial(...)
2. ├─base::suppressMessages(loadSpatial(conn = conn))
3. │ └─base::withCallingHandlers(...)
4. └─dbSpatial::loadSpatial(conn = conn)
5. ├─DBI::dbExecute(conn, query)
6. └─DBI::dbExecute(conn, query)
7. ├─DBI::dbSendStatement(conn, statement, ...)
8. └─DBI::dbSendStatement(conn, statement, ...)
9. ├─DBI::dbSendQuery(conn, statement, ...)
10. └─duckdb::dbSendQuery(conn, statement, ...)
11. └─duckdb (local) .local(conn, statement, ...)
12. └─duckdb:::duckdb_result(connection = conn, stmt_lst = stmt_lst, arrow = arrow)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'spatial_operations.Rmd' failed with diagnostics:
Invalid Error: Invalid Input Error: Initialization function "spatial_duckdb_cpp_init" from file "/tmp/Rtmpnjg4qm/working_dir/RtmppyRZOK/file3ec4b51086fba2/R/duckdb/extensions/v1.5.2/linux_amd64/spatial.duckdb_extension" threw an exception: "Missing DB manager"
ℹ Context: rapi_execute
ℹ Error type: INVALID
--- failed re-building ‘spatial_operations.Rmd’
SUMMARY: processing the following files failed:
‘class_structure.Rmd’ ‘getting_started.Rmd’ ‘spatial_operations.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang