Last updated on 2026-06-08 14:50:22 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.4.1 | 15.64 | 256.55 | 272.19 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.4.1 | 10.63 | 131.38 | 142.01 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.4.1 | 30.00 | 455.47 | 485.47 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.4.1 | 28.00 | 536.79 | 564.79 | OK | |
| r-devel-windows-x86_64 | 0.4.1 | 28.00 | 344.00 | 372.00 | OK | |
| r-patched-linux-x86_64 | 0.4.1 | 16.76 | 247.92 | 264.68 | OK | |
| r-release-linux-x86_64 | 0.4.1 | 14.39 | 247.09 | 261.48 | OK | |
| r-release-macos-arm64 | 0.4.1 | 4.00 | 115.00 | 119.00 | OK | |
| r-release-macos-x86_64 | 0.4.1 | 12.00 | 649.00 | 661.00 | OK | |
| r-release-windows-x86_64 | 0.4.1 | 28.00 | 349.00 | 377.00 | OK | |
| r-oldrel-macos-arm64 | 0.4.1 | OK | ||||
| r-oldrel-macos-x86_64 | 0.4.1 | 11.00 | 657.00 | 668.00 | OK | |
| r-oldrel-windows-x86_64 | 0.4.1 | 36.00 | 461.00 | 497.00 | OK |
Version: 0.4.1
Check: whether startup messages can be suppressed
Result: NOTE
Error: package or namespace load failed for ‘epiparameter’:
.onLoad failed in loadNamespace() for 'epiparameter', details:
call: file()
error: cannot open the connection
Execution halted
It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.1
Check: foreign function calls
Result: NOTE
Error: .onLoad failed in loadNamespace() for 'epiparameter', details:
call: file()
error: cannot open the connection
Call sequence:
3: stop(gettextf("%s failed in %s() for '%s', details:\n call: %s\n error: %s",
hookname, "loadNamespace", pkgname, deparse(conditionCall(res))[1L],
conditionMessage(res)), call. = FALSE, domain = NA)
2: runHook(".onLoad", env, package.lib, package)
1: loadNamespace(package, lib.loc)
Execution halted
See chapter ‘System and foreign language interfaces’ in the ‘Writing R
Extensions’ manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.1
Check: Rd \usage sections
Result: NOTE
Error in file(open = "w+", encoding = "UTF-8") :
cannot open the connection
Calls: <Anonymous> -> .load_namespace_quietly -> .try_quietly
Execution halted
The \usage entries for S3 methods should use the \method markup and not
their full name.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.1
Check: examples
Result: ERROR
Running examples in ‘epiparameter-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: c.epiparameter
> ### Title: 'c()' method for <epiparameter> class
> ### Aliases: c.epiparameter c.multi_epiparameter
>
> ### ** Examples
>
> db <- epiparameter_db()
Returning 125 results that match the criteria (100 are parameterised).
Use subset to filter by entry variables or single_epiparameter to return a single entry.
To retrieve the citation for each use the 'get_citation' function
>
> # combine two <epiparameter> objects into a list
> c(db[[1]], db[[2]])
# List of 2 <epiparameter> objects
Number of diseases: 2
❯ Adenovirus ❯ Human Coronavirus
Number of epi parameters: 1
❯ incubation period
[[1]]
Disease: Adenovirus
Pathogen: Adenovirus
Epi Parameter: incubation period
Study: Lessler J, Reich N, Brookmeyer R, Perl T, Nelson K, Cummings D (2009).
“Incubation periods of acute respiratory viral infections: a systematic
review.” _The Lancet Infectious Diseases_.
doi:10.1016/S1473-3099(09)70069-6
<https://doi.org/10.1016/S1473-3099%2809%2970069-6>.
Distribution: lnorm (days)
Parameters:
meanlog: 1.723
sdlog: 0.231
[[2]]
Warning in file() :
cannot open file '/tmp/Rtmpvzl4Sm/Rf8301eb4f7e86': No space left on device
Error in file() : cannot open the connection
Calls: <Anonymous> ... getDynamicFlags -> recurse -> recurse -> processRdChunk -> file
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.1
Check: tests
Result: ERROR
Running ‘spelling.R’ [0s/0s]
Running ‘testthat.R’ [3s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> # nolint start
> library(testthat)
> library(epiparameter)
Error: package or namespace load failed for 'epiparameter':
.onLoad failed in loadNamespace() for 'epiparameter', details:
call: file()
error: cannot open the connection
In addition: Warning message:
In file() :
cannot open file '/tmp/RtmpW3EjXZ/Rf86901593b877a': No space left on device
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.4.1
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘data_protocol.Rmd’ using rmarkdown
Quitting from data_protocol.Rmd:21-23 [load-epiparameter]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'epiparameter':
.onLoad failed in loadNamespace() for 'epiparameter', details:
call: file()
error: cannot open the connection
---
Backtrace:
▆
1. └─base::library(epiparameter)
2. └─base::tryCatch(...)
3. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'data_protocol.Rmd' failed with diagnostics:
package or namespace load failed for 'epiparameter':
.onLoad failed in loadNamespace() for 'epiparameter', details:
call: file()
error: cannot open the connection
--- failed re-building ‘data_protocol.Rmd’
--- re-building ‘database.Rmd’ using rmarkdown
Quitting from database.Rmd:13-41 [unnamed-chunk-1]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! package or namespace load failed for 'epiparameter':
.onLoad failed in loadNamespace() for 'epiparameter', details:
call: file()
error: cannot open the connection
---
Backtrace:
▆
1. └─base::library("epiparameter")
2. └─base::tryCatch(...)
3. └─base (local) tryCatchList(expr, classes, parentenv, handlers)
4. └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
5. └─value[[3L]](cond)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'database.Rmd' failed with diagnostics:
package or namespace load failed for 'epiparameter':
.onLoad failed in loadNamespace() for 'epiparameter', details:
call: file()
error: cannot open the connection
--- failed re-building ‘database.Rmd’
--- re-building ‘design_principles.Rmd’ using rmarkdown
--- finished re-building ‘design_principles.Rmd’
--- re-building ‘epiparameter.Rmd’ using rmarkdown
--- finished re-building ‘epiparameter.Rmd’
--- re-building ‘extract_convert.Rmd’ using rmarkdown
--- finished re-building ‘extract_convert.Rmd’
SUMMARY: processing the following files failed:
‘data_protocol.Rmd’ ‘database.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc