Last updated on 2026-08-04 14:52:14 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.1.2 | 49.56 | 592.66 | 642.22 | OK | |
| r-devel-linux-x86_64-debian-gcc | 0.1.2 | 35.82 | 416.13 | 451.95 | NOTE | |
| r-devel-linux-x86_64-fedora-clang | 0.1.2 | 88.00 | 983.29 | 1071.29 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 0.1.2 | 39.00 | 415.84 | 454.84 | OK | |
| r-devel-windows-x86_64 | 0.1.2 | 49.00 | 462.00 | 511.00 | OK | |
| r-patched-linux-x86_64 | 0.1.2 | 44.42 | 561.08 | 605.50 | OK | |
| r-release-linux-x86_64 | 0.1.2 | 46.35 | 558.94 | 605.29 | OK | |
| r-release-macos-arm64 | 0.1.2 | 14.00 | 146.00 | 160.00 | OK | |
| r-release-macos-x86_64 | 0.1.2 | 34.00 | 562.00 | 596.00 | OK | |
| r-release-windows-x86_64 | 0.1.2 | 50.00 | 464.00 | 514.00 | OK | |
| r-oldrel-macos-arm64 | 0.1.2 | 14.00 | 103.00 | 117.00 | ERROR | |
| r-oldrel-macos-x86_64 | 0.1.2 | 33.00 | 443.00 | 476.00 | ERROR | |
| r-oldrel-windows-x86_64 | 0.1.2 | 68.00 | 697.00 | 765.00 | OK |
Version: 0.1.2
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp041E4m’ ‘~/tmp/scratch/Rtmp0TmIFD’
‘~/tmp/scratch/Rtmp0V1gQB’ ‘~/tmp/scratch/Rtmp0cgBS7’
‘~/tmp/scratch/Rtmp14JYZv’ ‘~/tmp/scratch/Rtmp1BFrob’
‘~/tmp/scratch/Rtmp1DPLbK’ ‘~/tmp/scratch/Rtmp1FxAuf’
‘~/tmp/scratch/Rtmp1qDfEM’ ‘~/tmp/scratch/Rtmp1zrBCd’
‘~/tmp/scratch/Rtmp2M6ggN’ ‘~/tmp/scratch/Rtmp2NQytg’
‘~/tmp/scratch/Rtmp4iOPbz’ ‘~/tmp/scratch/Rtmp4rCCU5’
‘~/tmp/scratch/Rtmp4sbW2g’ ‘~/tmp/scratch/Rtmp5Dc0gX’
‘~/tmp/scratch/Rtmp5Yx1uA’ ‘~/tmp/scratch/Rtmp5qIA2t’
‘~/tmp/scratch/Rtmp67pEiv’ ‘~/tmp/scratch/Rtmp69xW7N’
‘~/tmp/scratch/Rtmp6iXVgB’ ‘~/tmp/scratch/Rtmp6pydQ1’
‘~/tmp/scratch/Rtmp748GUP’ ‘~/tmp/scratch/Rtmp77VDyu’
‘~/tmp/scratch/Rtmp7RqG2G’ ‘~/tmp/scratch/Rtmp9WhdoC’
‘~/tmp/scratch/Rtmp9YTvLz’ ‘~/tmp/scratch/RtmpA1j7cO’
‘~/tmp/scratch/RtmpAAbXFy’ ‘~/tmp/scratch/RtmpAIeIry’
‘~/tmp/scratch/RtmpB1xxJR’ ‘~/tmp/scratch/RtmpB8sYty’
‘~/tmp/scratch/RtmpBHsA9Q’ ‘~/tmp/scratch/RtmpBcPMtm’
‘~/tmp/scratch/RtmpC6pdy0’ ‘~/tmp/scratch/RtmpDMdl0L’
‘~/tmp/scratch/RtmpDPajyi’ ‘~/tmp/scratch/RtmpDrI6Qg’
‘~/tmp/scratch/RtmpES4OmO’ ‘~/tmp/scratch/RtmpESMZzu’
‘~/tmp/scratch/RtmpF0TSlW’ ‘~/tmp/scratch/RtmpFGUG7e’
‘~/tmp/scratch/RtmpFT4T2w’ ‘~/tmp/scratch/RtmpGLcMrf’
‘~/tmp/scratch/RtmpGV7zss’ ‘~/tmp/scratch/RtmpGY3Tjw’
‘~/tmp/scratch/RtmpGsmz5k’ ‘~/tmp/scratch/RtmpHIIhod’
‘~/tmp/scratch/RtmpHotuW4’ ‘~/tmp/scratch/RtmpHscKLM’
‘~/tmp/scratch/RtmpIc2sk1’ ‘~/tmp/scratch/RtmpIx18zt’
‘~/tmp/scratch/RtmpJ2YVQC’ ‘~/tmp/scratch/RtmpJUBy1W’
‘~/tmp/scratch/RtmpJUTe9e’ ‘~/tmp/scratch/RtmpJZGG9I’
‘~/tmp/scratch/RtmpJdNcLr’ ‘~/tmp/scratch/RtmpJgTcpc’
‘~/tmp/scratch/RtmpJj5gyj’ ‘~/tmp/scratch/RtmpJpxZJt’
‘~/tmp/scratch/RtmpK1TGqM’ ‘~/tmp/scratch/RtmpK8enj8’
‘~/tmp/scratch/RtmpKAbXBZ’ ‘~/tmp/scratch/RtmpLF9aMq’
‘~/tmp/scratch/RtmpLcG03v’ ‘~/tmp/scratch/RtmpLiN2yh’
‘~/tmp/scratch/RtmpLqeGAJ’ ‘~/tmp/scratch/RtmpLyjrIP’
‘~/tmp/scratch/RtmpMbIzSH’ ‘~/tmp/scratch/RtmpMkfZPH’
‘~/tmp/scratch/RtmpN1V0Qv’ ‘~/tmp/scratch/RtmpN4R2FZ’
‘~/tmp/scratch/RtmpNYxJBp’ ‘~/tmp/scratch/RtmpO3BZen’
‘~/tmp/scratch/RtmpOX0WiA’ ‘~/tmp/scratch/RtmpOqLSDw’
‘~/tmp/scratch/RtmpQ2WBIP’ ‘~/tmp/scratch/RtmpQjGsqV’
‘~/tmp/scratch/RtmpRXdPTQ’ ‘~/tmp/scratch/RtmpSMMLwe’
‘~/tmp/scratch/RtmpSMkmKo’ ‘~/tmp/scratch/RtmpSNELNn’
‘~/tmp/scratch/RtmpSTRtrU’ ‘~/tmp/scratch/RtmpSxJOJS’
‘~/tmp/scratch/RtmpT9NUwc’ ‘~/tmp/scratch/RtmpTFE3JS’
‘~/tmp/scratch/RtmpTJ8Ozp’ ‘~/tmp/scratch/RtmpTRcSSK’
‘~/tmp/scratch/RtmpTpiYCG’ ‘~/tmp/scratch/RtmpTxOdoq’
‘~/tmp/scratch/RtmpUfyZVA’ ‘~/tmp/scratch/RtmpV3lOkf’
‘~/tmp/scratch/RtmpX6QhNK’ ‘~/tmp/scratch/RtmpXVrIjg’
‘~/tmp/scratch/RtmpY7QumD’ ‘~/tmp/scratch/RtmpYofagM’
‘~/tmp/scratch/RtmpYySk9I’ ‘~/tmp/scratch/RtmpZAkU8z’
‘~/tmp/scratch/RtmpZE8CoK’ ‘~/tmp/scratch/RtmpZcu6ui’
‘~/tmp/scratch/RtmpZrqoPG’ ‘~/tmp/scratch/RtmpaR9XZx’
‘~/tmp/scratch/RtmpazQW75’ ‘~/tmp/scratch/RtmpbHj7hB’
‘~/tmp/scratch/Rtmpbd0wpj’ ‘~/tmp/scratch/RtmpbgNyMc’
‘~/tmp/scratch/RtmpblGPox’ ‘~/tmp/scratch/Rtmpc2EBU4’
‘~/tmp/scratch/RtmpcUAhAo’ ‘~/tmp/scratch/RtmpcrXPbG’
‘~/tmp/scratch/Rtmpcuj4eH’ ‘~/tmp/scratch/Rtmpdc6TNs’
‘~/tmp/scratch/Rtmpduiish’ ‘~/tmp/scratch/RtmpdwRtzJ’
‘~/tmp/scratch/RtmpeBjRXo’ ‘~/tmp/scratch/RtmpeLnxC8’
‘~/tmp/scratch/RtmpeSZPeO’ ‘~/tmp/scratch/Rtmpf57lO9’
‘~/tmp/scratch/RtmpfAzzkT’ ‘~/tmp/scratch/RtmpfMUE9b’
‘~/tmp/scratch/RtmpfV2aeo’ ‘~/tmp/scratch/RtmphUunEP’
‘~/tmp/scratch/Rtmphj03gV’ ‘~/tmp/scratch/RtmpiSxIDI’
‘~/tmp/scratch/RtmpiX9X1t’ ‘~/tmp/scratch/RtmpiZO9Iu’
‘~/tmp/scratch/Rtmpijp1Nl’ ‘~/tmp/scratch/Rtmpijqr2p’
‘~/tmp/scratch/RtmpjSaaxV’ ‘~/tmp/scratch/Rtmpjabzi1’
‘~/tmp/scratch/RtmpjmpZn4’ ‘~/tmp/scratch/Rtmpjv0ZSA’
‘~/tmp/scratch/RtmpkNY15T’ ‘~/tmp/scratch/RtmpkUSiuo’
‘~/tmp/scratch/RtmpkUqjtZ’ ‘~/tmp/scratch/RtmpkXCx4s’
‘~/tmp/scratch/RtmpkwZs9y’ ‘~/tmp/scratch/RtmplQvHeD’
‘~/tmp/scratch/RtmplsBFYn’ ‘~/tmp/scratch/RtmpmMeI6s’
‘~/tmp/scratch/RtmpmiiwC3’ ‘~/tmp/scratch/RtmpnBzRl9’
‘~/tmp/scratch/RtmpnHSMuV’ ‘~/tmp/scratch/RtmpnWiJg5’
‘~/tmp/scratch/Rtmpno2ahX’ ‘~/tmp/scratch/Rtmpnr45A2’
‘~/tmp/scratch/RtmpoApBtN’ ‘~/tmp/scratch/Rtmpp9AHAE’
‘~/tmp/scratch/RtmppFsFAu’ ‘~/tmp/scratch/RtmppblebV’
‘~/tmp/scratch/RtmpqkTvsJ’ ‘~/tmp/scratch/RtmprKGP52’
‘~/tmp/scratch/RtmprkHunB’ ‘~/tmp/scratch/Rtmps62sD1’
‘~/tmp/scratch/RtmpsYRwti’ ‘~/tmp/scratch/RtmpszurHP’
‘~/tmp/scratch/Rtmpt8Ugut’ ‘~/tmp/scratch/RtmptuzWFl’
‘~/tmp/scratch/RtmpuA42j1’ ‘~/tmp/scratch/RtmpuWYU52’
‘~/tmp/scratch/RtmpvTA3NE’ ‘~/tmp/scratch/RtmpvTX3kI’
‘~/tmp/scratch/RtmpvaLNoi’ ‘~/tmp/scratch/RtmpvgIpXq’
‘~/tmp/scratch/RtmpvhWiEj’ ‘~/tmp/scratch/RtmpvkEHAK’
‘~/tmp/scratch/RtmpwlU1aI’ ‘~/tmp/scratch/RtmpyaAU0Q’
‘~/tmp/scratch/Rtmpyim2rk’ ‘~/tmp/scratch/Rtmpyma6OI’
‘~/tmp/scratch/RtmpyorbWU’ ‘~/tmp/scratch/Rtmpz3mxt9’
‘~/tmp/scratch/RtmpzAuEEX’ ‘~/tmp/scratch/RtmpzI7Xim’
‘~/tmp/scratch/Rtmpza1bzj’ ‘~/tmp/scratch/RtmpzqcWvG’
‘~/tmp/scratch/ccDDF3cj.s’ ‘~/tmp/scratch/xvfb-run.0n7xng’
‘~/tmp/scratch/xvfb-run.15HPSc’ ‘~/tmp/scratch/xvfb-run.2l7HQC’
‘~/tmp/scratch/xvfb-run.2ykANS’ ‘~/tmp/scratch/xvfb-run.5BUoun’
‘~/tmp/scratch/xvfb-run.5X7MSU’ ‘~/tmp/scratch/xvfb-run.6gNfPD’
‘~/tmp/scratch/xvfb-run.6sIHFo’ ‘~/tmp/scratch/xvfb-run.89ROqE’
‘~/tmp/scratch/xvfb-run.BQRhnH’ ‘~/tmp/scratch/xvfb-run.BnV2p9’
‘~/tmp/scratch/xvfb-run.Cp3fJ9’ ‘~/tmp/scratch/xvfb-run.CvTiMq’
‘~/tmp/scratch/xvfb-run.DIzkDr’ ‘~/tmp/scratch/xvfb-run.DdYS9s’
‘~/tmp/scratch/xvfb-run.DucNQc’ ‘~/tmp/scratch/xvfb-run.E7lLEY’
‘~/tmp/scratch/xvfb-run.EEuDbr’ ‘~/tmp/scratch/xvfb-run.EPA6pP’
‘~/tmp/scratch/xvfb-run.FLr4Yr’ ‘~/tmp/scratch/xvfb-run.GmvfAW’
‘~/tmp/scratch/xvfb-run.H8YFj9’ ‘~/tmp/scratch/xvfb-run.HXgLMT’
‘~/tmp/scratch/xvfb-run.HdyJpH’ ‘~/tmp/scratch/xvfb-run.JbCIrB’
‘~/tmp/scratch/xvfb-run.K80i1C’ ‘~/tmp/scratch/xvfb-run.LgMwNt’
‘~/tmp/scratch/xvfb-run.LlYZcQ’ ‘~/tmp/scratch/xvfb-run.MGI4Mz’
‘~/tmp/scratch/xvfb-run.Mu9KxA’ ‘~/tmp/scratch/xvfb-run.NIFejy’
‘~/tmp/scratch/xvfb-run.NiJM8S’ ‘~/tmp/scratch/xvfb-run.NkPUkZ’
‘~/tmp/scratch/xvfb-run.P4slU5’ ‘~/tmp/scratch/xvfb-run.PzFRAo’
‘~/tmp/scratch/xvfb-run.RXMAM2’ ‘~/tmp/scratch/xvfb-run.Sdg0kr’
‘~/tmp/scratch/xvfb-run.TkVXOz’ ‘~/tmp/scratch/xvfb-run.U0o0kA’
‘~/tmp/scratch/xvfb-run.V4EYm8’ ‘~/tmp/scratch/xvfb-run.V4VO9j’
‘~/tmp/scratch/xvfb-run.V6jxtC’ ‘~/tmp/scratch/xvfb-run.X4TmQU’
‘~/tmp/scratch/xvfb-run.XFI9YT’ ‘~/tmp/scratch/xvfb-run.XMzkOM’
‘~/tmp/scratch/xvfb-run.Zzui4m’ ‘~/tmp/scratch/xvfb-run.ayAJm6’
‘~/tmp/scratch/xvfb-run.dSo5Te’ ‘~/tmp/scratch/xvfb-run.fA25Lb’
‘~/tmp/scratch/xvfb-run.fU9YmG’ ‘~/tmp/scratch/xvfb-run.gEXQN5’
‘~/tmp/scratch/xvfb-run.gGqkdG’ ‘~/tmp/scratch/xvfb-run.gqRiwo’
‘~/tmp/scratch/xvfb-run.hOq4T0’ ‘~/tmp/scratch/xvfb-run.iD7DPN’
‘~/tmp/scratch/xvfb-run.iMwGXg’ ‘~/tmp/scratch/xvfb-run.igBUkD’
‘~/tmp/scratch/xvfb-run.ioxN6n’ ‘~/tmp/scratch/xvfb-run.irjxgh’
‘~/tmp/scratch/xvfb-run.jGiL7l’ ‘~/tmp/scratch/xvfb-run.jhBlRF’
‘~/tmp/scratch/xvfb-run.juJmg0’ ‘~/tmp/scratch/xvfb-run.llKIeG’
‘~/tmp/scratch/xvfb-run.lwcMxJ’ ‘~/tmp/scratch/xvfb-run.m82aP9’
‘~/tmp/scratch/xvfb-run.n8bJKf’ ‘~/tmp/scratch/xvfb-run.nS9xRd’
‘~/tmp/scratch/xvfb-run.nlY70o’ ‘~/tmp/scratch/xvfb-run.o8ahhB’
‘~/tmp/scratch/xvfb-run.or0uz1’ ‘~/tmp/scratch/xvfb-run.pvSsF3’
‘~/tmp/scratch/xvfb-run.qF3X0C’ ‘~/tmp/scratch/xvfb-run.qmlxxI’
‘~/tmp/scratch/xvfb-run.r9vv2P’ ‘~/tmp/scratch/xvfb-run.rPOFfs’
‘~/tmp/scratch/xvfb-run.sTmS2t’ ‘~/tmp/scratch/xvfb-run.tgjqsS’
‘~/tmp/scratch/xvfb-run.ua9WSG’ ‘~/tmp/scratch/xvfb-run.xmzO2u’
‘~/tmp/scratch/xvfb-run.yle8DJ’ ‘~/tmp/scratch/xvfb-run.ynASP5’
‘~/tmp/scratch/xvfb-run.zmeP9v’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [4s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lisat)
> testthat::test_check("lisat")
Saving _problems/test-functions-71.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ────────
Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it.
Backtrace:
▆
1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-arm64
Version: 0.1.2
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
--- re-building ‘lisat-intro.Rmd’ using rmarkdown
Quitting from lisat-intro.Rmd:107-111 [cis_analysis]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `[.data.frame`:
! undefined columns selected
---
Backtrace:
▆
1. └─lisat::CIS(IS_raw = IS_raw, connect_distance = 50000)
2. ├─IS_raw[, c("Locus", "Chr", "nearest_gene_name")]
3. └─base::`[.data.frame`(IS_raw, , c("Locus", "Chr", "nearest_gene_name"))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'lisat-intro.Rmd' failed with diagnostics:
undefined columns selected
--- failed re-building ‘lisat-intro.Rmd’
SUMMARY: processing the following file failed:
‘lisat-intro.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavors: r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.1.2
Check: tests
Result: ERROR
Running ‘testthat.R’ [10s/24s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(lisat)
> testthat::test_check("lisat")
Saving _problems/test-functions-71.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-functions.R:71:1'): (code run outside of `test_that()`) ────────
Error: Package "TxDb.Hsapiens.UCSC.hg38.knownGene" needed for this function to work. Please install it.
Backtrace:
▆
1. └─lisat::get_feature(IS_raw) at test-functions.R:71:1
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 0 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-macos-x86_64