Last updated on 2026-08-03 01:49:41 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 0.3.13 | 6.87 | 195.23 | 202.10 | ERROR | |
| r-devel-linux-x86_64-debian-gcc | 0.3.13 | 4.22 | 136.96 | 141.18 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 0.3.13 | 12.00 | 296.16 | 308.16 | ERROR | |
| r-devel-linux-x86_64-fedora-gcc | 0.3.13 | 122.33 | ERROR | |||
| r-devel-windows-x86_64 | 0.3.13 | 8.00 | 198.00 | 206.00 | ERROR | |
| r-patched-linux-x86_64 | 0.3.13 | 6.49 | 180.35 | 186.84 | ERROR | |
| r-release-linux-x86_64 | 0.3.13 | 5.78 | 181.69 | 187.47 | ERROR | |
| r-release-macos-arm64 | 0.3.13 | 2.00 | 55.00 | 57.00 | OK | |
| r-release-macos-x86_64 | 0.3.13 | 5.00 | 242.00 | 247.00 | OK | |
| r-release-windows-x86_64 | 0.3.13 | 8.00 | 203.00 | 211.00 | ERROR | |
| r-oldrel-macos-arm64 | 0.3.13 | 2.00 | 55.00 | 57.00 | OK | |
| r-oldrel-macos-x86_64 | 0.3.13 | 5.00 | 190.00 | 195.00 | OK | |
| r-oldrel-windows-x86_64 | 0.3.13 | 11.00 | 274.00 | 285.00 | ERROR |
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [83s/108s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-clang
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [55s/73s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.13
Check: for new files in some other directories
Result: NOTE
Found the following files/directories:
‘~/tmp/scratch/Rtmp01gY43’ ‘~/tmp/scratch/Rtmp08kAk8’
‘~/tmp/scratch/Rtmp0u1Ud8’ ‘~/tmp/scratch/Rtmp1EMIsz’
‘~/tmp/scratch/Rtmp1JKoIe’ ‘~/tmp/scratch/Rtmp1dWQzD’
‘~/tmp/scratch/Rtmp35nW9c’ ‘~/tmp/scratch/Rtmp395O5g’
‘~/tmp/scratch/Rtmp3BWs4g’ ‘~/tmp/scratch/Rtmp3K5RUL’
‘~/tmp/scratch/Rtmp3MMuWS’ ‘~/tmp/scratch/Rtmp3b64I7’
‘~/tmp/scratch/Rtmp3v5axS’ ‘~/tmp/scratch/Rtmp3wr3B9’
‘~/tmp/scratch/Rtmp41Lmx5’ ‘~/tmp/scratch/Rtmp4AsvZD’
‘~/tmp/scratch/Rtmp4bY4kp’ ‘~/tmp/scratch/Rtmp4dsPUh’
‘~/tmp/scratch/Rtmp522ND0’ ‘~/tmp/scratch/Rtmp5ffLSO’
‘~/tmp/scratch/Rtmp5qWoeO’ ‘~/tmp/scratch/Rtmp5zK4oy’
‘~/tmp/scratch/Rtmp6ZLviM’ ‘~/tmp/scratch/Rtmp6o42eE’
‘~/tmp/scratch/Rtmp6qVKoX’ ‘~/tmp/scratch/Rtmp71lmiU’
‘~/tmp/scratch/Rtmp75Qe0L’ ‘~/tmp/scratch/Rtmp7NnAM8’
‘~/tmp/scratch/Rtmp7zayx0’ ‘~/tmp/scratch/Rtmp8diIOx’
‘~/tmp/scratch/Rtmp9Fhzdi’ ‘~/tmp/scratch/Rtmp9snu31’
‘~/tmp/scratch/Rtmp9wy3fV’ ‘~/tmp/scratch/RtmpA7bTAr’
‘~/tmp/scratch/RtmpAwPNE6’ ‘~/tmp/scratch/RtmpBMKkpo’
‘~/tmp/scratch/RtmpBQEvpr’ ‘~/tmp/scratch/RtmpBReeMI’
‘~/tmp/scratch/RtmpBTRviT’ ‘~/tmp/scratch/RtmpBo1dVB’
‘~/tmp/scratch/RtmpC2LOXu’ ‘~/tmp/scratch/RtmpCGDz1j’
‘~/tmp/scratch/RtmpCtojc3’ ‘~/tmp/scratch/RtmpCwsN7W’
‘~/tmp/scratch/RtmpD5dzFP’ ‘~/tmp/scratch/RtmpD5hePr’
‘~/tmp/scratch/RtmpD6Vp45’ ‘~/tmp/scratch/RtmpDHh6LT’
‘~/tmp/scratch/RtmpDXhyVY’ ‘~/tmp/scratch/RtmpDyDIPI’
‘~/tmp/scratch/RtmpE0ykf7’ ‘~/tmp/scratch/RtmpF0ZoPb’
‘~/tmp/scratch/RtmpFHETcz’ ‘~/tmp/scratch/RtmpFUey7B’
‘~/tmp/scratch/RtmpFpl9Qz’ ‘~/tmp/scratch/RtmpFwSrC8’
‘~/tmp/scratch/RtmpGHBu3e’ ‘~/tmp/scratch/RtmpGIgYRr’
‘~/tmp/scratch/RtmpGoN69V’ ‘~/tmp/scratch/RtmpHEQoJS’
‘~/tmp/scratch/RtmpHGPDgQ’ ‘~/tmp/scratch/RtmpHLJHQM’
‘~/tmp/scratch/RtmpIHD8np’ ‘~/tmp/scratch/RtmpILDlwG’
‘~/tmp/scratch/RtmpIh861C’ ‘~/tmp/scratch/RtmpIkDHq1’
‘~/tmp/scratch/RtmpKeYEa1’ ‘~/tmp/scratch/RtmpKk5aj9’
‘~/tmp/scratch/RtmpLYzzeF’ ‘~/tmp/scratch/RtmpLmSRIS’
‘~/tmp/scratch/RtmpLroiWe’ ‘~/tmp/scratch/RtmpMOMwkD’
‘~/tmp/scratch/RtmpMsSvLG’ ‘~/tmp/scratch/RtmpOFYQl1’
‘~/tmp/scratch/RtmpOdfUDY’ ‘~/tmp/scratch/RtmpOexzdf’
‘~/tmp/scratch/RtmpOiH6xD’ ‘~/tmp/scratch/RtmpPHWp49’
‘~/tmp/scratch/RtmpPVbe7S’ ‘~/tmp/scratch/RtmpPmZdrU’
‘~/tmp/scratch/RtmpQTHYhn’ ‘~/tmp/scratch/RtmpQUizu8’
‘~/tmp/scratch/RtmpRB0PQ7’ ‘~/tmp/scratch/RtmpRPUJHH’
‘~/tmp/scratch/RtmpSLVuHC’ ‘~/tmp/scratch/RtmpSjfvvu’
‘~/tmp/scratch/RtmpSryA54’ ‘~/tmp/scratch/RtmpTbvcim’
‘~/tmp/scratch/RtmpVC2dbR’ ‘~/tmp/scratch/RtmpVJ5Unm’
‘~/tmp/scratch/RtmpVKTpaR’ ‘~/tmp/scratch/RtmpVYxHO5’
‘~/tmp/scratch/RtmpW9qLVl’ ‘~/tmp/scratch/RtmpWGGBjJ’
‘~/tmp/scratch/RtmpXEl6UB’ ‘~/tmp/scratch/RtmpXZkUYm’
‘~/tmp/scratch/RtmpYM9akl’ ‘~/tmp/scratch/RtmpYdUpwX’
‘~/tmp/scratch/RtmpYk6FEU’ ‘~/tmp/scratch/RtmpZ7y6Ne’
‘~/tmp/scratch/RtmpbLni9O’ ‘~/tmp/scratch/RtmpbXkdgo’
‘~/tmp/scratch/Rtmpbc5BpF’ ‘~/tmp/scratch/RtmpcLgz7a’
‘~/tmp/scratch/RtmpcO8c4F’ ‘~/tmp/scratch/RtmpcR8MDG’
‘~/tmp/scratch/Rtmpcl62dg’ ‘~/tmp/scratch/RtmpdEWAIP’
‘~/tmp/scratch/RtmpdKnEJf’ ‘~/tmp/scratch/RtmpdYjOrs’
‘~/tmp/scratch/RtmpdjzRPX’ ‘~/tmp/scratch/Rtmpdz4vzS’
‘~/tmp/scratch/RtmpeAXGfu’ ‘~/tmp/scratch/RtmpeRwhcn’
‘~/tmp/scratch/RtmpegEFJy’ ‘~/tmp/scratch/Rtmpf9ppPu’
‘~/tmp/scratch/RtmpfvEIHR’ ‘~/tmp/scratch/RtmpgTu9f4’
‘~/tmp/scratch/RtmpggBazJ’ ‘~/tmp/scratch/RtmpgsAQh0’
‘~/tmp/scratch/RtmphVUaN9’ ‘~/tmp/scratch/RtmpiX1X0c’
‘~/tmp/scratch/Rtmpim9vv8’ ‘~/tmp/scratch/Rtmpj2s13j’
‘~/tmp/scratch/RtmpjcAsLU’ ‘~/tmp/scratch/RtmpkrnVfU’
‘~/tmp/scratch/Rtmpktzwqg’ ‘~/tmp/scratch/RtmplMtenG’
‘~/tmp/scratch/RtmplslxSU’ ‘~/tmp/scratch/RtmplwsOcZ’
‘~/tmp/scratch/Rtmpm5R28X’ ‘~/tmp/scratch/RtmpmEAlzy’
‘~/tmp/scratch/RtmpmUwR6M’ ‘~/tmp/scratch/RtmpmchFQG’
‘~/tmp/scratch/Rtmpmlm4nP’ ‘~/tmp/scratch/Rtmpn5HaJm’
‘~/tmp/scratch/RtmpnWUZ9i’ ‘~/tmp/scratch/Rtmpo0mPkX’
‘~/tmp/scratch/RtmpoWtJRl’ ‘~/tmp/scratch/RtmpqBVVQI’
‘~/tmp/scratch/Rtmpqp0oNU’ ‘~/tmp/scratch/RtmprEZIX9’
‘~/tmp/scratch/RtmprKeK3T’ ‘~/tmp/scratch/RtmprgLtNb’
‘~/tmp/scratch/RtmprqT3Ai’ ‘~/tmp/scratch/RtmpsKeO89’
‘~/tmp/scratch/RtmpsQKWZA’ ‘~/tmp/scratch/Rtmpt3kaYb’
‘~/tmp/scratch/Rtmptz17HX’ ‘~/tmp/scratch/RtmpuAzt0O’
‘~/tmp/scratch/RtmpuYC8vL’ ‘~/tmp/scratch/RtmpuqyZYR’
‘~/tmp/scratch/RtmpvA9oEG’ ‘~/tmp/scratch/RtmpvbiOkm’
‘~/tmp/scratch/RtmpwGrxxC’ ‘~/tmp/scratch/Rtmpxb9Zez’
‘~/tmp/scratch/RtmpxzXc1u’ ‘~/tmp/scratch/RtmpyBTTcd’
‘~/tmp/scratch/RtmpyFot5X’ ‘~/tmp/scratch/Rtmpz17u0t’
‘~/tmp/scratch/cc3xnpZe.s’
‘~/tmp/scratch/quarto-sessiona9d5b59c16b17812’
‘~/tmp/scratch/xvfb-run.0f13Of’ ‘~/tmp/scratch/xvfb-run.18AQxs’
‘~/tmp/scratch/xvfb-run.1AJVoE’ ‘~/tmp/scratch/xvfb-run.1iThBt’
‘~/tmp/scratch/xvfb-run.20IxbK’ ‘~/tmp/scratch/xvfb-run.3QjRZV’
‘~/tmp/scratch/xvfb-run.3aykF5’ ‘~/tmp/scratch/xvfb-run.45pvlK’
‘~/tmp/scratch/xvfb-run.75D14v’ ‘~/tmp/scratch/xvfb-run.7ORBkB’
‘~/tmp/scratch/xvfb-run.AaGVYA’ ‘~/tmp/scratch/xvfb-run.Aapx0U’
‘~/tmp/scratch/xvfb-run.AylEk0’ ‘~/tmp/scratch/xvfb-run.BaSshD’
‘~/tmp/scratch/xvfb-run.Bivfzb’ ‘~/tmp/scratch/xvfb-run.C6Wydd’
‘~/tmp/scratch/xvfb-run.DCTqq0’ ‘~/tmp/scratch/xvfb-run.DZQKy4’
‘~/tmp/scratch/xvfb-run.GOVH7M’ ‘~/tmp/scratch/xvfb-run.Gu7G4c’
‘~/tmp/scratch/xvfb-run.IqXj4V’ ‘~/tmp/scratch/xvfb-run.J3JmPh’
‘~/tmp/scratch/xvfb-run.JhnHFk’ ‘~/tmp/scratch/xvfb-run.KDgJKb’
‘~/tmp/scratch/xvfb-run.MF9Siz’ ‘~/tmp/scratch/xvfb-run.Ny6z0n’
‘~/tmp/scratch/xvfb-run.OtPWbW’ ‘~/tmp/scratch/xvfb-run.PFueXr’
‘~/tmp/scratch/xvfb-run.Qk73Hj’ ‘~/tmp/scratch/xvfb-run.QxqOwO’
‘~/tmp/scratch/xvfb-run.SttYWY’ ‘~/tmp/scratch/xvfb-run.U7YDgy’
‘~/tmp/scratch/xvfb-run.UF5s8N’ ‘~/tmp/scratch/xvfb-run.UJeBnO’
‘~/tmp/scratch/xvfb-run.UT7DfM’ ‘~/tmp/scratch/xvfb-run.VJ1BAb’
‘~/tmp/scratch/xvfb-run.VdyDa0’ ‘~/tmp/scratch/xvfb-run.VxCV2v’
‘~/tmp/scratch/xvfb-run.Wumx97’ ‘~/tmp/scratch/xvfb-run.XIkF32’
‘~/tmp/scratch/xvfb-run.XQu5vN’ ‘~/tmp/scratch/xvfb-run.YmlRTH’
‘~/tmp/scratch/xvfb-run.Z5RkqY’ ‘~/tmp/scratch/xvfb-run.arWG4B’
‘~/tmp/scratch/xvfb-run.b6biKO’ ‘~/tmp/scratch/xvfb-run.bTmOyw’
‘~/tmp/scratch/xvfb-run.bU0Qg0’ ‘~/tmp/scratch/xvfb-run.c9KI3d’
‘~/tmp/scratch/xvfb-run.dlFQn0’ ‘~/tmp/scratch/xvfb-run.fR9WCv’
‘~/tmp/scratch/xvfb-run.gd7Yb9’ ‘~/tmp/scratch/xvfb-run.hN3n2f’
‘~/tmp/scratch/xvfb-run.hRELI2’ ‘~/tmp/scratch/xvfb-run.ho38yR’
‘~/tmp/scratch/xvfb-run.htL1SG’ ‘~/tmp/scratch/xvfb-run.jECTF1’
‘~/tmp/scratch/xvfb-run.k5So2l’ ‘~/tmp/scratch/xvfb-run.k8FaUR’
‘~/tmp/scratch/xvfb-run.lstnkt’ ‘~/tmp/scratch/xvfb-run.lxb2h6’
‘~/tmp/scratch/xvfb-run.m4oj3M’ ‘~/tmp/scratch/xvfb-run.mzlRyp’
‘~/tmp/scratch/xvfb-run.p2InGr’ ‘~/tmp/scratch/xvfb-run.pk0z7q’
‘~/tmp/scratch/xvfb-run.qVD8LO’ ‘~/tmp/scratch/xvfb-run.rS9hX5’
‘~/tmp/scratch/xvfb-run.rsBINn’ ‘~/tmp/scratch/xvfb-run.wzziWA’
‘~/tmp/scratch/xvfb-run.zInAgq’ ‘~/.cache/quarto/sass/sass.kv-shm’
‘~/.cache/quarto/sass/sass.kv-wal’
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [126s/165s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-clang
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [48s/55s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-fedora-gcc
Version: 0.3.13
Check: tests
Result: ERROR
Running 'testthat.R' [72s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-windows-x86_64
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [77s/99s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-patched-linux-x86_64
Version: 0.3.13
Check: tests
Result: ERROR
Running ‘testthat.R’ [76s/113s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X = X, FUN = FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-linux-x86_64
Version: 0.3.13
Check: tests
Result: ERROR
Running 'testthat.R' [73s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-release-windows-x86_64
Version: 0.3.13
Check: tests
Result: ERROR
Running 'testthat.R' [111s]
Running the tests in 'tests/testthat.R' failed.
Complete output:
> suppressPackageStartupMessages(library(testthat))
> suppressPackageStartupMessages(library(pulsar))
>
> testthat::test_check("pulsar")
Saving _problems/test_pulsar-23.R
Saving _problems/test_pulsar-25.R
Saving _problems/test_pulsar-38.R
Saving _problems/test_pulsar-41.R
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_pulsar.R:22:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:24:1'): weird lambda path results in correct error or warning ──
Error in `.huge_default_lambda(S, d, nlambda, lambda.min.ratio, lambda)`: lambda must be non-increasing for method = "mb" or "glasso"; tied values are allowed.
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::.try_mclapply(...)
8. ├─base::withCallingHandlers(...)
9. └─parallel::mclapply(X, FUN, mc.cores = 1L, ...)
10. └─base::lapply(X, FUN, ...)
11. └─pulsar (local) FUN(X[[i]], ...)
12. ├─base::do.call(fun, c(fargs, list(data[ind.sample, ])))
13. └─huge (local) `<fn>`(verbose = FALSE, scr = TRUE, lambda = `<dbl>`, `<dbl[,15]>`)
14. └─huge::huge.mb(...)
15. └─huge:::.huge_default_lambda(...)
── Error ('test_pulsar.R:36:1'): weird lambda path results in correct error or warning ──
<subscriptOutOfBoundsError/error/condition>
Error in `est$merge[[i]]`: subscript out of bounds
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─pulsar:::stars.stability(NULL, thresh, rep.num, p, starsmerge)
── Error ('test_pulsar.R:39:1'): weird lambda path results in correct error or warning ──
Error: Job with id 1 not terminated
Backtrace:
▆
1. ├─testthat::expect_warning(...)
2. │ └─testthat:::quasi_capture(...)
3. │ ├─testthat (local) .capture(...)
4. │ │ └─base::withCallingHandlers(...)
5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
6. └─pulsar (local) pfun(dat$data, fun = fun, fargs = hargs, rep.num = 3, ...)
7. └─batchtools::loadResult(id = 1, reg = reg)
8. └─batchtools:::stopf("Job with id %i not terminated", id$job.id)
[ FAIL 4 | WARN 8 | SKIP 0 | PASS 304 ]
Error:
! Test failures.
Execution halted
Flavor: r-oldrel-windows-x86_64