Last updated on 2026-10-24 02:56:25 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0 | 12.07 | 202.44 | 214.51 | OK | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0 | 7.35 | 135.09 | 142.44 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0 | 10.00 | 169.70 | 179.70 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.0 | 149.39 | OK | |||
| r-devel-windows-x86_64 | 1.0.0 | 15.00 | 333.00 | 348.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0 | 11.73 | 193.04 | 204.77 | OK | |
| r-release-linux-x86_64 | 1.0.0 | 10.92 | 194.14 | 205.06 | OK | |
| r-release-macos-arm64 | 1.0.0 | 3.00 | 47.00 | 50.00 | OK | |
| r-release-macos-x86_64 | 1.0.0 | 8.00 | 211.00 | 219.00 | OK | |
| r-release-windows-x86_64 | 1.0.0 | 13.00 | 318.00 | 331.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0 | 3.00 | 48.00 | 51.00 | OK | |
| r-oldrel-macos-x86_64 | 1.0.0 | 8.00 | 132.00 | 140.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.0 | 20.00 | 340.00 | 360.00 | OK |
Version: 1.0.0
Check: tests
Result: ERROR
Running ‘testthat.R’ [18s/25s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(testflow)
>
> test_check("testflow")
Note: model has aliased coefficients
sums of squares computed by model comparison
Saving _problems/test-print-112.R
Saving _problems/test-test-survival-50.R
Saving _problems/test-test-survival-81.R
[ FAIL 3 | WARN 2 | SKIP 0 | PASS 493 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-print.R:112:3'): print.testflow surfaces per-term results tables ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─testflow::test_cox(Surv(time, status) ~ age, data = sd) at test-print.R:112:3
2. └─survival::cox.zph(fit)
3. └─survival:::coxph.getdata(...)
4. ├─stats::model.matrix(fit, data = mf)
5. └─survival:::model.matrix.coxph(fit, data = mf)
6. └─stats::delete.response(object$terms)
7. └─stats (local) off(a$specials[[i]])
── Error ('test-test-survival.R:50:3'): test_cox matches coxph()/cox.zph() exactly for a multi-predictor model ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─testflow::test_cox(...) at test-test-survival.R:50:3
2. └─survival::cox.zph(fit)
3. └─survival:::coxph.getdata(...)
4. ├─stats::model.matrix(fit, data = mf)
5. └─survival:::model.matrix.coxph(fit, data = mf)
6. └─stats::delete.response(object$terms)
7. └─stats (local) off(a$specials[[i]])
── Error ('test-test-survival.R:81:3'): test_cox works with a single predictor ──
<subscriptOutOfBoundsError/error/condition>
Error in `a$specials[[i]]`: subscript out of bounds
Backtrace:
▆
1. └─testflow::test_cox(survival::Surv(time, status) ~ age, data = dat) at test-test-survival.R:81:3
2. └─survival::cox.zph(fit)
3. └─survival:::coxph.getdata(...)
4. ├─stats::model.matrix(fit, data = mf)
5. └─survival:::model.matrix.coxph(fit, data = mf)
6. └─stats::delete.response(object$terms)
7. └─stats (local) off(a$specials[[i]])
[ FAIL 3 | WARN 2 | SKIP 0 | PASS 493 ]
Error:
! Test failures.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc
Version: 1.0.0
Check: re-building of vignette outputs
Result: ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘getting-started.Rmd’ using rmarkdown
--- finished re-building ‘getting-started.Rmd’
--- re-building ‘sample-size-api-reference.Rmd’ using rmarkdown
--- finished re-building ‘sample-size-api-reference.Rmd’
--- re-building ‘sample-size-planning.Rmd’ using rmarkdown
--- finished re-building ‘sample-size-planning.Rmd’
--- re-building ‘scientific-validation.Rmd’ using rmarkdown
--- finished re-building ‘scientific-validation.Rmd’
--- re-building ‘testflow-complete-reference.Rmd’ using rmarkdown
Quitting from testflow-complete-reference.Rmd:558-562 [unnamed-chunk-22]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `a$specials[[i]]`:
! subscript out of bounds
---
Backtrace:
x
1. \-testflow::test_cox(Surv(time, status) ~ age + arm, data = survival_dat)
2. \-survival::cox.zph(fit)
3. \-survival:::coxph.getdata(...)
4. +-stats::model.matrix(fit, data = mf)
5. \-survival:::model.matrix.coxph(fit, data = mf)
6. \-stats::delete.response(object$terms)
7. \-stats (local) off(a$specials[[i]])
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'testflow-complete-reference.Rmd' failed with diagnostics:
subscript out of bounds
--- failed re-building ‘testflow-complete-reference.Rmd’
SUMMARY: processing the following file failed:
‘testflow-complete-reference.Rmd’
Error: Vignette re-building failed.
Execution halted
Flavor: r-devel-linux-x86_64-debian-gcc