We develop Multi-source Graph Synthesis (MUGS), an algorithm designed to create embeddings for pediatric Electronic Health Record (EHR) codes by leveraging graphical information from three distinct sources: (1) pediatric EHR data, (2) EHR data from the general patient population, and (3) existing hierarchical medical ontology knowledge shared across different patient populations. See Li et al. (2024) <doi:10.1038/s41746-024-01320-4> for details.
| Version: | 0.1.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | MASS, Matrix, fastDummies, doSNOW, dplyr, grplasso, foreach, glmnet, grpreg, inline, mvtnorm, pROC, parallel, RcppArmadillo, rsvd, methods |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2025-05-19 |
| Author: | Mengyan Li [cre, aut], Thomas Charlon [ctb] (ORCID: 0000-0001-7497-0470), Xiaoou Li [aut], Tianxi Cai [aut], PARSE LTD [aut], CELEHS Team [aut] |
| Maintainer: | Mengyan Li <mengyanli at bentley.edu> |
| License: | GPL-3 |
| URL: | https://github.com/celehs/MUGS, https://celehs.github.io/MUGS/, https://doi.org/10.1038/s41746-024-01320-4 |
| NeedsCompilation: | no |
| Materials: | README NEWS |
| CRAN checks: | MUGS results |
| Reference manual: | MUGS.pdf |
| Vignettes: |
CodeEff_Matrix_usage (source, R code) CodeSiteEff_I2_par_usage (source, R code) DataGen_rare_group_usage (source, R code) Evaluation_sim_usage (source, R code) GroupEff_par_usage (source, R code) get_embed_usage (source, R code) Multisource Graph Synthesis with EHR Data (source, R code) |
| Package source: | MUGS_0.1.0.tar.gz |
| Windows binaries: | r-devel: not available, r-release: not available, r-oldrel: not available |
| macOS binaries: | r-release (arm64): not available, r-oldrel (arm64): not available, r-release (x86_64): not available, r-oldrel (x86_64): not available |
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